Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq48 107 2e-18 seq14 96.9 3e-15 seq13 91.5 1e-13 seq25 89.7 4e-13 seq23 89.7 4e-13 seq19 89.7 4e-13 seq5 87.8 2e-12 seq27 84.2 2e-11 >seq48 Length=1435396 Score = 107 bits (118), Expect = 2e-18 Identities = 157/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||||||||| || || ||| ||||| || ||||| || ||||| |||| | Sbjct 1250509 CGCAACACCAAATGGAGGGTAGACTCCTTTTGAATGTTATAGTCTGCAAGGGTTCTGCCA 1250450 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTT 39188 || ||||||||||| || ||||| || | | ||||||||| |||||| | || ||| || Sbjct 1250449 TCTTCAAGCTGTTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGTGGG-ATGCCCTCCTT 1250391 Query 39189 GTCCATGATTTTCTGTTTGAGCG-TCGCCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| | | | | | || | | | ||||| |||||| || | |||| Sbjct 1250390 GTCC-TGAATCTTGGCCTTAACGTTATCAATTGTATCAGAACTCTCCACCTCTAAAGTGA 1250332 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||||| || |||||||| |||||||| ||||| Sbjct 1250331 TGGTTTTTCCAGTGAGCGTTTTTACAAAGATCTGCAT 1250295 >seq14 Length=44799946 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 |||||| || | || || ||| ||||| || || |||||||||||||| || || | Sbjct 8848371 GCGTAAGACGAGGTGGAGGGTGGATTCTTTCTGGATGTTATAATCGGCAAGGGTCCGACC 8848430 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTT 39187 ||| || ||||||||||| || || || |||||||||||||| |||||| | || || | Sbjct 8848431 GTCTTCGAGCTGTTTGCCAGCGAAAATGAGACGCTGCTGGTCGGGTGGGATCCCT-TCCT 8848489 Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTG 39246 |||| ||| || |||| ||| | | | || ||| || || || | || Sbjct 8848490 TGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTTTCGACCTCGAGTGTT 8848548 Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || | || || || || ||||| |||||||| |||||||| Sbjct 8848549 ATGGTCTTGCCGGTAAGGGTTTTCACAAAGATCTGCATCTT 8848589 >seq13 Length=56485995 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 |||||| || | || || ||| ||||| || || |||||||| ||||| || || | Sbjct 54270763 GCGTAAGACGAGGTGGAGGGTGGATTCTTTCTGGATGTTATAATCAGCAAGGGTCCGACC 54270704 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTT 39187 ||| || ||||||||||| || || || |||||||||||||| |||||| | || || | Sbjct 54270703 GTCTTCGAGCTGTTTGCCAGCGAAAATGAGACGCTGCTGGTCGGGTGGGATCCCT-TCCT 54270645 Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTG 39246 |||| ||| || |||| ||| | | | || ||| || || || | || Sbjct 54270644 TGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTTTCGACCTCGAGTGTT 54270586 Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || | || || || || ||||| |||||||| |||||||| Sbjct 54270585 ATGGTCTTGCCGGTAAGGGTTTTCACAAAGATCTGCATCTT 54270545 >seq25 Length=50193149 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| || || ||| || || ||||||||||||||||| |||| | | || ||| Sbjct 28160471 ACCAAATGGAGAGTAGACTCCTTCTGGATATTATAATCGGCAAGAGTTCTTCCATCTTCA 28160412 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 || ||||| || ||||| || | | || ||||| |||||| | | ||||||||| Sbjct 28160411 AGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGG-ATTCCTTCTTTGTCCTG 28160353 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGA---CTCCACGTCCACCGTGATACT 39251 || || ||| | | | | ||||| ||| ||| || |||| || || | Sbjct 28160352 AATCTTGGCTTTCACATTGTCAATGGTATC---CGAACTCTCGACCTCCAAGGTAATTGT 28160296 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || ||||| |||||||||||||| Sbjct 28160295 CTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 28160263 >seq23 Length=61753794 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| || || ||| || || ||||||||||||||||| || | | | || ||| Sbjct 39554003 ACCAAATGGAGAGTAGACTCCTTCTGGATATTATAATCGGCAAGAGTCCTTCCATCTTCA 39554062 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 || ||||| || ||||| || | | || ||||| |||||| | | ||||||||| Sbjct 39554063 AGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGG-ATTCCTTCTTTGTCCTG 39554121 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGA---CTCCACGTCCACCGTGATACT 39251 || || ||| | | | | ||||| ||| |||||| |||| || || | Sbjct 39554122 AATCTTGGCTTTCACATTATCAATGGTATC---CGAACTCTCCACCTCCAAGGTAATTGT 39554178 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || ||||| |||||||||||||| Sbjct 39554179 CTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 39554211 >seq19 Length=70911690 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||| | || | |||||| || || || |||||| || ||||||||||| ||| Sbjct 3137496 CCTCCTCGAAGTCGGAGCACCAAGTGGAGGGTAGACTCTTTCTGGATATTATAATCTGCA 3137555 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 ||||| | | || || ||||||||||| ||||| || | | |||||| || ||||| Sbjct 3137556 AGTGTCCTACCATCTTCGAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGATCTGGTGGA 3137615 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || || |||||| ||| || ||| | | | || || || ||| || Sbjct 3137616 ATCCCT-TCCTTGTCCTGGATCTTAGCTTTTACATTGTCAACGGTGTCAGAACTCTCAAC 3137674 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || ||| | ||||| || || || || ||||| |||||||| Sbjct 3137675 TTCCAAAGTAATAGTCTTTCCGGTGAGAGTCTTCACAAAAATTTGCAT 3137722 >seq5 Length=56898656 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | || | ||| | ||| || ||| || || || || || || ||||| Sbjct 37776781 CCTCCCCTAAGACGGAGCACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCT 37776840 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | || || |||| || ||||| ||||| ||||| || || ||||| ||||||| || Sbjct 37776841 AAGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGTTGGTCGGGTGGG 37776900 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || || ||||| ||| || ||||| | | | || ||| ||||| || Sbjct 37776901 ATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAACC 37776960 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 || | || || | || ||||| || ||||| || ||||||||||||||| Sbjct 37776961 TCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTGACGAAGATTTGCATCTTT 37777011 >seq27 Length=3408634 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 |||| |||| ||| || || || || || ||||| |||||||| | || || || Sbjct 2140511 CGTAGAACCAGATGAAGAGTCGATTCCTTCTGGATATTGTAATCGGCTAAAGTCCGCCCG 2140452 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || || || || || || || || ||||| |||||||| | || | || || ||| Sbjct 2140451 TCCTCGAGTTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTG 2140392 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATC---GCTCGACTCCACGTCCACCGT 39245 || |||||| ||| | ||| | | | ||| || |||| || || || | || Sbjct 2140391 TCTTGGATTTTGGCTTTCA-CGTTGTCGATCGTGTCAGAGCTC---TCGACCTCGAGAGT 2140336 Query 39246 GATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 ||| | |||||||| ||||| ||||| |||||||||||| Sbjct 2140335 GATCGTCTTTCCCGTAAGCGTCTTAACGAAGATTTGCATC 2140296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429497709424124