Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq22 141 8e-29 seq19 131 1e-25 seq16 100 2e-16 seq228 95.1 1e-14 >seq22 Length=61129363 Score = 141 bits (156), Expect = 8e-29 Identities = 380/578 (66%), Gaps = 5/578 (1%) Strand=Plus/Plus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 || || || ||||| || || | |||||| |||| || | ||||| || || ||| Sbjct 6287576 AAGCAAGCGAAATCGCAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTT 6287635 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 |||||||||||||| || |||||||| | ||||||||| || || || || || Sbjct 6287636 AATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAA 6287695 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCT 4724 || || ||||||||| ||||| || | ||| || |||| | | || | | Sbjct 6287696 AAGATCCCTTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAG---TTTCTCCGCCG 6287752 Query 4725 TTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCG 4784 | |||||||| | ||||| | |||||||| || ||||| | || | || ||| Sbjct 6287753 TCGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 6287812 Query 4785 TTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATAC 4844 || | | |||||| | |||| || ||||| || | || || || ||| Sbjct 6287813 CGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTAC 6287872 Query 4845 ATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGT-AAAAGCATCTAGCTTCTGT 4903 || || || || |||||||| ||||| || || || || | ||||||| | || || | Sbjct 6287873 ATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCA-CGCGCCTCGGA 6287931 Query 4904 TACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963 | || || || || || | | | | ||| || ||||| || || ||| Sbjct 6287932 GATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGC 6287991 Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023 || ||||| || | ||| ||| || |||| || || || | | || ||| ||| Sbjct 6287992 GGCGAAAAAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGTTTCCCA 6288051 Query 5024 GTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTT 5083 ||| | | |||| || | ||| ||||| || | ||||||||||||||||| ||||| Sbjct 6288052 GTGACGAAGATCTGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTT 6288111 Query 5084 TTTGTACATAGACCAAATATCAGGATACTGAATCGGAA 5121 |||||||| ||| | || || || || ||||||| Sbjct 6288112 CTTGTACATTTCCCATACTTCTGGGTATTGGATCGGAA 6288149 >seq19 Length=70911690 Score = 131 bits (144), Expect = 1e-25 Identities = 239/346 (69%), Gaps = 7/346 (2%) Strand=Plus/Minus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 || || ||||| || ||||| | |||||| |||| |||| ||||| || || ||| Sbjct 44463880 AAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTT 44463821 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCG--GCAAATGACCCAGAAA 4662 ||||| |||||||| || | |||||| | ||||||||| || | || || | ||||| Sbjct 44463820 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCACAGAAACTGCCGGAGAAA 44463761 Query 4663 AGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGT 4722 | |||||||||||||| || || || | ||| | | | | | |||| | | Sbjct 44463760 A--ATATGCCTTCTACGCAAGCGAAAGCGATTAACC--GTTCGGCAAAAGCT-TCGCCGC 44463706 Query 4723 CTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAG 4782 | | |||||||| || ||||| | |||||||| |||||||| | || | ||| Sbjct 44463705 CGTCGATCCATTTCAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAG 44463646 Query 4783 CGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTAT 4842 ||| || | ||||||| | |||| ||||||||| || | || || |||| Sbjct 44463645 CGTGGAAGAGGCGGTTTTTTTCGGTGGAATCTTTAATATAAGTTTCGAGGAGGAGACTAT 44463586 Query 4843 ACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAA 4888 |||| ||||| || ||||| || || || || || ||||| ||||| Sbjct 44463585 ACATCTCAGAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAA 44463540 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 |||| ||| ||||||||||| ||||| |||| || ||||| |||||| ||||||| Sbjct 44464186 ACTCTCTTCTCGAAGAAATTGGTTTTCCCTTGCAATGAAATTAGTTCCATCCAATCAAAA 44464127 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 || |||| || ||||| ||| || || || |||| | | ||| || || || || Sbjct 44464126 GGGTTAGCCGCATTGTACATTTTGCCATACCCTAAAGCTCCTAACAACCGATCCGCAACG 44464067 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAA 4435 || || || || || ||||| | || | ||| || |||| ||| Sbjct 44464066 AACTCAATGTATTGACTCATCAACTCACCGTTCATCCCAACTAA 44464023 >seq16 Length=102030775 Score = 100 bits (110), Expect = 2e-16 Identities = 229/344 (67%), Gaps = 3/344 (1%) Strand=Plus/Minus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 || || || |||||||| || | |||||| |||| || | ||||| || || ||| Sbjct 57862378 AAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTT 57862319 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 |||||||||||||| || |||||||| | ||||||||| || || || || || Sbjct 57862318 AATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAA 57862259 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCT 4724 || || || |||||| ||||| || | ||| || |||| | | || | | Sbjct 57862258 AAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAG---TTTCTCCGCCG 57862202 Query 4725 TTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCG 4784 | |||||||| | ||||| | |||||||| || ||||| | || | || ||| Sbjct 57862201 TCGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 57862142 Query 4785 TTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATAC 4844 || | | |||||| | |||| || ||||| || | || || || ||| Sbjct 57862141 CGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTAC 57862082 Query 4845 ATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAA 4888 || || || || |||||||| ||||| || || || || ||||| Sbjct 57862081 ATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAA 57862038 >seq228 Length=356584 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/226 (70%), Gaps = 7/226 (3%) Strand=Plus/Plus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 || || ||||| || ||||| | |||||| |||| |||| ||||| || || ||| Sbjct 282327 AAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTT 282386 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCG--GCAAATGACCCAGAAA 4662 ||||| |||||||| || | |||||| | ||||||||| ||| | || || | ||||| Sbjct 282387 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTGCCGGAGAAA 282446 Query 4663 AGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGT 4722 | |||||||||||||| || || || | ||| | | | | | |||| | | Sbjct 282447 A--ATATGCCTTCTACGCAAGCGAAAGCGATTAACC--GTTCGGCAAAAGCT-TCGCGGC 282501 Query 4723 CTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGG 4768 | | |||||||| || ||||| | |||||||| |||||||| Sbjct 282502 CGTCGATCCATTTGAAAGCCCAATCGGCTTTTTTAGCCACGCACGG 282547 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 |||| ||| ||||||||||| ||||| |||| || ||||| |||||| ||||||| Sbjct 281976 ACTCTCTTCTCGAAGAAATTGGTTTTCCCTTGCAATGAAATTAGTTCCATCCAATCAAAA 282035 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 || |||| || ||||| ||| || || || |||| | | ||| || || || || Sbjct 282036 GGGTTAGCCGCATTGTACATTTTGCCATACCCTAAAGCTCCTAACAACCGATCCGCAACG 282095 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAA 4435 || || || || || ||||| | || | ||| || |||| ||| Sbjct 282096 AACTCAATGTATTGACTCATCAACTCACCGTTCATCCCAACTAA 282139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427001987706284