Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq22 205 1e-47 seq16 147 3e-30 seq19 138 2e-27 seq7 105 9e-18 seq4 105 9e-18 seq25 93.3 6e-14 seq2 93.3 6e-14 seq228 91.5 2e-13 >seq22 Length=61129363 Score = 205 bits (226), Expect = 1e-47 Identities = 570/870 (66%), Gaps = 6/870 (1%) Strand=Plus/Plus Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909 |||||||| || || || | ||||||||| ||||| ||||| |||| ||| ||||| | Sbjct 6287288 TTTTGATACTCTCCAACCCTTTTCTCGAAGAAATTGGTTTTCCCTTGCAACGATATCAGT 6287347 Query 47910 TCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATC 47969 ||||| |||||||||| || || |||| || || ||| | ||||| || | | Sbjct 6287348 TCCATCCAATCAAATGGGTTGACCACATTGTACATCTTTCCGTACCCTAACGCTCCCAGC 6287407 Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGT 48029 || | ||| || ||||| || || || | |||| | || | ||||| || | | Sbjct 6287408 AGCCGATCCGCTACGAACTCGATGTACCGACTCATTAACTCGCCGTTCATCCCAACCAAC 6287467 Query 48030 TTAACTGGTAGAGCCTC-CGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT 48088 || ||||| || | || ||| ||| || || || || ||| || ||| Sbjct 6287468 GCGCAGGGGAGAGCATCGCATACGAA-CTCCCTCTCTATGTCCACCGCGTCCCTTACTAT 6287526 Query 48089 CGATGTTACCGTTTCCTCACTTGG--TGGATACAACAAATGTTTAAACATTAAACATGCA 48146 | | || || ||||| | | || | | | || || || || || Sbjct 6287527 CCCCCTCACGCGCTCTTCACTCAGCTTTGACCGGAGGAGAGAGTA--CAGCAAGCAAGCG 6287584 Query 48147 AAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGC 48206 ||||| || || ||||||||||||| ||||| ||||| || || || | |||||| Sbjct 6287585 AAATCGCAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTTAATCCGGGC 6287644 Query 48207 ATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCT 48266 |||| || | ||||| | ||||||||| || |||| ||| || || || || ||| Sbjct 6287645 ATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAGATCCCT 6287704 Query 48267 TCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATCCACCGT 48326 |||||| ||||| ||| | | | || || || | || || || ||||| Sbjct 6287705 TCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCGTCGATCCATTTC 6287764 Query 48327 TGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAG 48386 ||||| || || || || ||||| |||| || || || || || ||| | Sbjct 6287765 ATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCGCGGAAAAGACGG 6287824 Query 48387 tttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGA 48446 || ||||||| | |||||| | |||||| || | | ||||| ||||| |||||||| Sbjct 6287825 TTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTACATCTCGGAGTGG 6287884 Query 48447 ATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCC 48506 |||||||| || || || || || || |||||| | ||| || | |||||| ||||| Sbjct 6287885 ATATTTTCGATAGCGATTTGGAAACCATAAAAAGCACGCGCCTCGGAGATCTGGACCTCT 6287944 Query 48507 GTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCT 48566 | || || |||| | |||||| ||||| ||||| || || ||||| || Sbjct 6287945 TTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGCGGCGAAAAAGGCG 6288004 Query 48567 AATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCT 48626 | || || |||| || | | || | || || || | | ||||| | | |||| Sbjct 6288005 AGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGTTTCCCAGTGACGAAGATCT 6288064 Query 48627 TTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTC 48686 || | ||| ||||| || || |||||||| || || || ||||| || ||||| | | Sbjct 6288065 GAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTTCTTGTACATTTCC 6288124 Query 48687 CATATATCACTGTATTGGATTGGGAAAATA 48716 |||| || ||||||||| || || ||| Sbjct 6288125 CATACTTCTGGGTATTGGATCGGAAACATA 6288154 >seq16 Length=102030775 Score = 147 bits (162), Expect = 3e-30 Identities = 415/633 (66%), Gaps = 6/633 (1%) Strand=Plus/Minus Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909 |||||||| || || || | ||||||||| ||||| ||||| |||| ||| ||||| | Sbjct 57862666 TTTTGATACTCTCCAACTCTTTTCTCGAAGAAATTGGTTTTCCCTTGCAACGATATCAGT 57862607 Query 47910 TCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATC 47969 ||||| |||||||||| || || | || || || ||| | ||||| || | | Sbjct 57862606 TCCATCCAATCAAATGGGTTGACCACGTTGTACATCTTTCCGTACCCTAACGCTCCCAAC 57862547 Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGT 48029 | ||||| || ||||| || || || |||| | || | ||||| || | | Sbjct 57862546 AACCTATCCGCTACGAACTCGATGTACTGACTCATTAACTCGCCGTTCATCCCAACCAAC 57862487 Query 48030 TTAACTGGTAGAGCCTC-CGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT 48088 || ||||| || | || ||| ||| || || || || ||| || ||| Sbjct 57862486 GCGCAGGGCAGAGCATCGCATACGAA-CTCCCTCTCTATGTCCACCGCGTCCCTTACTAT 57862428 Query 48089 CGATGTTACCGTTTCCTCACTTGG--TGGATACAACAAATGTTTAAACATTAAACATGCA 48146 | | | || ||| ||||| | | || | | | || || || || || Sbjct 57862427 CCCTCTCACGCGTTCTTCACTCAGCTTTGACCGGAGGAGAGAGTA--CAGCAAGCAAGCG 57862370 Query 48147 AAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGC 48206 |||||||| || ||||||||||||| ||||| ||||| || || || | |||||| Sbjct 57862369 AAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTTAATCCGGGC 57862310 Query 48207 ATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCT 48266 |||| || | ||||| | ||||||||| || |||| ||| || || || || || Sbjct 57862309 ATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAGATCCCC 57862250 Query 48267 TCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATCCACCGT 48326 |||||| ||||| ||| | | | || || || | || || || ||||| Sbjct 57862249 TCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCGTCGATCCATTTC 57862190 Query 48327 TGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAG 48386 ||||| || || || || ||||| |||| || || || || || ||| | Sbjct 57862189 ATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCGCGGAAAAGACGG 57862130 Query 48387 tttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGA 48446 || ||||||| | |||||| | |||||| || | | ||||| ||||| |||||||| Sbjct 57862129 TTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTACATCTCGGAGTGG 57862070 Query 48447 ATATTTTCAATTGCCATCTGAAATCCGTAAAAA 48479 |||||||| || || || || || || |||||| Sbjct 57862069 ATATTTTCGATAGCGATTTGGAAACCATAAAAA 57862037 >seq19 Length=70911690 Score = 138 bits (152), Expect = 2e-27 Identities = 254/371 (68%), Gaps = 6/371 (2%) Strand=Plus/Minus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 || || ||||| || ||||| ||||||||||||| | || || ||||| || || || Sbjct 44463880 AAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTT 44463821 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 | || ||||||| || || ||||| | ||||||||| || |||| || || || Sbjct 44463820 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCACAGAAACTGCCGGAGAAA 44463761 Query 48258 AATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTT---CGTTG 48314 ||||||||||||||| || || ||| | | | || | || |||| || | Sbjct 44463760 AATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAA---GCTTCGCCGCCG 44463704 Query 48315 TGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 48374 | ||||| |||||||| || || || || || |||| ||||| |||| Sbjct 44463703 TCGATCCATTTCAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAGCG 44463644 Query 48375 TTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATAC 48434 | ||||| ||||||||| || |||||||| ||||| || | | ||||||||| Sbjct 44463643 TGGAAGAGGCGGTTTTTTTCGGTGGAATCTTTAATATAAGTTTCGAGGAGGAGACTATAC 44463584 Query 48435 ATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTG 48494 || || ||||| ||||| || || || || || ||||| ||||| | ||| || | | Sbjct 44463583 ATCTCAGAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAATGCACGCGCCTCCGCG 44463524 Query 48495 ATCTGTACCTC 48505 || || ||||| Sbjct 44463523 ATTTGGACCTC 44463513 >seq7 Length=42802127 Score = 105 bits (116), Expect = 9e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||||||||||| ||| |||| ||| |||||||| || |||||| ||| ||| ||| Sbjct 28742020 CTCTCTTTCATAATGAATATACAGCTCCTCAAATTCTTCACCCCAACAATCTGCCAGTCC 28741961 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 | ||||||| || || | |||||||| | |||| || |||| || |||||| Sbjct 28741960 TGAAGATTCATTAGGACAGAATAATGACCACTGCCCATTACTCTGGACTCTTTGCATAAA 28741901 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 78052 |||||||| | |||||||||| ||||||||| || Sbjct 28741900 AAGATCAGGCACCCATAGAGCATAAAATAGATCACG 28741865 Score = 93.3 bits (102), Expect = 6e-14 Identities = 142/201 (71%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| ||||| || | ||| ||||| ||||| ||||||||| ||| ||| | | | Sbjct 28741192 AGTTCCAGCATTGAAAAGTGTGGGAGAAGCATGAGTAAACCATCTTTGAGACATCATGTG 28741133 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517 || |||| ||||| || || ||||| | ||||||||| || || || | |||||| Sbjct 28741132 ATAAGTTTTTATAGCAGAATCAATGTCATTCTTATGAATTCCAACTGCAACCCTCATCAA 28741073 Query 78518 CATATGCTGAGGTCTTTC---AACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTC 78574 ||| || || || ||||| |||| || | | | ||| || | ||| || | || Sbjct 28741072 CATGTGTTGGGGCCTTTCTATAACCTTCCCTTGA---ACTTTTAAGAGGTAGGACCTCTC 28741016 Query 78575 CAAAGTTTTAAAACCAAAATA 78595 | ||||| ||||||||||| Sbjct 28741015 AAGGGTTTTGAAACCAAAATA 28740995 Score = 93.3 bits (102), Expect = 6e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | || |||| ||| | || | || |||||| | ||| || Sbjct 28741535 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACCCGCAGCATTGGGACAATGCCA 28741476 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 |||||||| |||||||||||| ||| ||||| | | || |||||||| || || Sbjct 28741475 TTAGATGTACCATTTGTTCCACGAATGTAACTACTTGTAGCCCGAATATTGTGAACTGAG 28741416 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || || || | ||| || ||||| || || || || Sbjct 28741415 ACACCAATTCCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTGTCATATATT 28741356 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| ||||||||||| |||| || | ||| ||||| Sbjct 28741355 CCCTCAATACTGTCATCTTTCATACACAGTAAAAAGCAGCT 28741315 Score = 86.0 bits (94), Expect = 9e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 77145 ACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATT 77204 ||||||||| | || ||||| ||||||||||| | | ||||| ||||| | ||| Sbjct 28743500 ACTCTACGACTATAGATATTGGATGTATATGGTTCAAAGCACTCATTATTTCCAAGAATC 28743441 Query 77205 TGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTT 77264 || ||| || ||||||||||||||||| | ||| | |||||| | ||||| | Sbjct 28743440 TGGCTAGTTGATGCAGTTGGCATAGGTGCTAACAAAAGTGAATTTCTCACTCCATGCTTA 28743381 Query 77265 CTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGA 77324 || || ||| | ||| ||||| ||||| ||| ||||| |||| |||| | | Sbjct 28743380 GCTATGTTGTCTCTAAGAGCATTCCAGTCCCACCGATTTGAAGCAGTAACACCCCACATA 28743321 Query 77325 TCGTATTGTAGAATTCC 77341 || | || ||||| || Sbjct 28743320 TCTTGCTGGAGAATACC 28743304 >seq4 Length=78750349 Score = 105 bits (116), Expect = 9e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||||||||||| ||| |||| ||| |||||||| || |||||| ||| ||| ||| Sbjct 13234299 CTCTCTTTCATAATGAATATACAGCTCCTCAAATTCTTCACCCCAACAATCTGCCAGTCC 13234240 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 || ||||||| || || | |||||||| | |||| || |||| || ||| || Sbjct 13234239 TGGAGATTCATTAGGACAGAATAATGACCACTGCCCATTACTCTGGACTCTTTGCATGAA 13234180 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 78052 |||||||| | |||||||||| ||||||||| || Sbjct 13234179 AAGATCAGGCACCCATAGAGCATAAAATAGATCACG 13234144 Score = 93.3 bits (102), Expect = 6e-14 Identities = 142/201 (71%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| ||||| || | ||| ||||| ||||| ||||||||| ||| ||| | | | Sbjct 13233471 AGTTCCAGCATTGAAAAGTGTGGGAGAAGCATGAGTAAACCATCTTTGAGACATCATGTG 13233412 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517 || |||| ||||| || || ||||| | ||||||||| || || || | |||||| Sbjct 13233411 ATAAGTTTTTATAGCAGAATCAATGTCATTCTTATGAATTCCAACTGCAACCCTCATCAA 13233352 Query 78518 CATATGCTGAGGTCTTTC---AACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTC 78574 ||| || || || ||||| |||| || | | | ||| || | ||| || | || Sbjct 13233351 CATGTGTTGGGGCCTTTCTATAACCTTCCCTTGA---ACTTTTAAGAGGTAGGACCTCTC 13233295 Query 78575 CAAAGTTTTAAAACCAAAATA 78595 | ||||| ||||||||||| Sbjct 13233294 AAGGGTTTTGAAACCAAAATA 13233274 Score = 93.3 bits (102), Expect = 6e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | || |||| ||| | || | || |||||| | ||| || Sbjct 13233814 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACCCGCAGCATTGGGACAATGCCA 13233755 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 |||||||| |||||||||||| ||| ||||| | | || |||||||| || || Sbjct 13233754 TTAGATGTACCATTTGTTCCACGAATGTAACTACTTGTAGCCCGAATATTGTGAACTGAG 13233695 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || || |||| ||| || ||||| || || || || Sbjct 13233694 ACACCAATTCCTCCAGCTGATTTGCTGATTATAGCACACTCCTTCAAAGTGTCATATATT 13233635 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| ||||| ||||| |||| || | ||| ||||| Sbjct 13233634 CCCTCGATACTATCATCTTTCATACACAGTAAAAAGCAGCT 13233594 Score = 89.7 bits (98), Expect = 7e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 77145 ACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATT 77204 ||||||||| | || ||||| ||||||||||| | | ||||| ||||| | ||| Sbjct 13235774 ACTCTACGACTATAGATATTGGAAGTATATGGTTCAAAGCACTCATTATTTCCAAGAATC 13235715 Query 77205 TGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTT 77264 || ||| || ||||||||||||||||| | ||| | |||||| | ||||| | Sbjct 13235714 TGGCTAGTTGATGCAGTTGGCATAGGTGCTAACAAAAGTGAATTTCTCACTCCATGCTTA 13235655 Query 77265 CTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGA 77324 || || ||| | ||| ||||| ||||| |||| ||||| |||| |||| | | Sbjct 13235654 GCTATGTTGTCTCTAAGAGCATTCCAGTCCCACAGATTTGAAGCAGTAACACCCCACATA 13235595 Query 77325 TCGTATTGTAGAATTCC 77341 || | || ||||| || Sbjct 13235594 TCTTGCTGGAGAATACC 13235578 >seq25 Length=50193149 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||||| || || | ||| | || | || |||||| | ||| || Sbjct 26656092 CCTCCTTGATCAACATATCGAGCAGTATCATTGAACACCCGCAGCATTGGGACAATTCCA 26656033 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 |||||||| |||||||||||| ||||||||| || | || |||||||| || || Sbjct 26656032 TTAGATGTACCATTTGTTCCACGAATATAACTACCTGTGGCTCGAATATTGTGAACAGAA 26655973 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || || || | ||| || ||||| || || || || Sbjct 26655972 ACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAAATT 26655913 Query 78339 CCCTCTATACTGTCATCCATCATG 78362 || || ||||| ||||| ||||| Sbjct 26655912 CCTTCAATACTATCATCTTTCATG 26655889 Score = 93.3 bits (102), Expect = 6e-14 Identities = 132/182 (73%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 77141 CAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAA 77200 ||| ||||||||| | |||||||| ||||||||| || | ||||||| || || | Sbjct 26658072 CAAAACTCTACGACTATAAATATTGGAGGTATATGGCTCAAAGCATTCATTATTCCCAAG 26658013 Query 77201 AATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATG 77260 ||| ||| ||| |||||||||||||||||||| | ||||| |||||| | |||| Sbjct 26658012 AATCTGACTAGTTGAAGCAGTTGGCATAGGTGCTAACAATAGTGAATTTCTCACTCCAT- 26657954 Query 77261 TGTT--CTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCC 77318 | || || || | || | ||| |||||||||| || ||||||| |||| || Sbjct 26657953 TCTTGGCT-ATCATGTCCCTAAGAGCAGTCCAATCCCACCGACCTGAAGGAGTAACACCC 26657895 Query 77319 CA 77320 || Sbjct 26657894 CA 26657893 >seq2 Length=106994729 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||||| || || | ||| | || | || |||||| | ||| || Sbjct 29496029 CCTCCTTGATCAACATATCGAGCAGTATCATTGAACACCCGCAGCATTGGGACAATTCCA 29495970 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 |||||||| |||||||||||| ||||||||| || | || |||||||| || || Sbjct 29495969 TTAGATGTACCATTTGTTCCACGAATATAACTACCTGTGGCTCGAATATTGTGAACAGAA 29495910 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || || || | ||| || ||||| || || || || Sbjct 29495909 ACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATATATT 29495850 Query 78339 CCCTCTATACTGTCATCCATCATG 78362 || || ||||| ||||| ||||| Sbjct 29495849 CCTTCAATACTATCATCTTTCATG 29495826 Score = 86.0 bits (94), Expect = 9e-12 Identities = 123/170 (72%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 77141 CAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAA 77200 ||| ||||| ||| | |||||||| ||||||||| || | ||||||| || || | Sbjct 29498009 CAAAACTCTGCGACTATAAATATTGGAGGTATATGGCTCAAAGCATTCATTATTCCCAAG 29497950 Query 77201 AATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATG 77260 ||| ||| ||| |||||||||||||||||||| | ||||| |||||| | |||| Sbjct 29497949 AATCTGACTAGTTGAAGCAGTTGGCATAGGTGCTAACAATAGTGAATTTCTCACTCCAT- 29497891 Query 77261 TGTT--CTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGG 77308 | || || || | || | ||| |||||||||| || ||||||| Sbjct 29497890 TCTTGGCT-ATCATGTCCCTAAGAGCAGTCCAATCCCACCGACCTGAAGG 29497842 >seq228 Length=356584 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 || || ||||| || ||||| ||||||||||||| | || || ||||| || || || Sbjct 282327 AAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTT 282386 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 | || ||||||| || || ||||| | ||||||||| || |||| || || || Sbjct 282387 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTGCCGGAGAAA 282446 Query 48258 AATATGCCTTCTACG 48272 ||||||||||||||| Sbjct 282447 AATATGCCTTCTACG 282461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694589364622720