Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq22 172 8e-38 seq4 129 8e-25 seq25 125 1e-23 seq2 125 1e-23 seq19 123 4e-23 seq7 120 4e-22 seq228 96.9 5e-15 >seq22 Length=61129363 Score = 172 bits (190), Expect = 8e-38 Identities = 563/871 (65%), Gaps = 8/871 (1%) Strand=Plus/Plus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 ||||| || || || || | ||||||||| ||||| ||||| |||| ||| ||||| | Sbjct 6287288 TTTTGATACTCTCCAACCCTTTTCTCGAAGAAATTGGTTTTCCCTTGCAACGATATCAGT 6287347 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 ||||| ||||||| || || ||||| || || ||| | ||||| || | | Sbjct 6287348 TCCATCCAATCAAATGGGTTGACCACATTGTACATCTTTCCGTACCCTAACGCTCCCAGC 6287407 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 || | ||| || ||||| || || ||| |||| | || | ||||| || | | Sbjct 6287408 AGCCGATCCGCTACGAACTCGATGTACCGACTCATTAACTCGCCGTTCATCCCAACCAAC 6287467 Query 46519 TTGACCGGTAGAGCCTC-CGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577 | || ||||| || | || ||| ||| || || || || ||| || ||| Sbjct 6287468 GCGCAGGGGAGAGCATCGCATACGAA-CTCCCTCTCTATGTCCACCGCGTCCCTTACTAT 6287526 Query 46578 CGATGTTACTGTTTCCTCACTTGG---TGGATGCATCAAATGTTTAAACATTAAACATGC 46634 | | || || ||||| | || | | | | | ||| || || || Sbjct 6287527 CCCCCTCACGCGCTCTTCACTCAGCTTTGACCGGAGGAGAGAGT---ACAGCAAGCAAGC 6287583 Query 46635 AAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGG 46694 ||||| || || || |||||||||| ||||| ||||| || || || | || || Sbjct 6287584 GAAATCGCAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTTAATCCGGG 6287643 Query 46695 CATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCC 46754 ||||| || | |||||| | ||||||||| || |||| ||| || || || || || Sbjct 6287644 CATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAGATCCC 6287703 Query 46755 TTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATCCACCT 46814 |||||| || || |||| | | || || || | | | | ||||| | Sbjct 6287704 TTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCGTCGATCCATTT 6287763 Query 46815 TTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 46874 |||||| || || ||||| ||||| |||| || || || || || ||| Sbjct 6287764 CATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCGCGGAAAAGACG 6287823 Query 46875 GtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATG 46934 ||| |||||||| |||||| | || || || | | ||||| ||||| || || || Sbjct 6287824 GTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTACATCTCGGAGTG 6287883 Query 46935 AATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTC 46994 || ||||| ||||| || || || || |||||| | || || | ||||| ||||| Sbjct 6287884 GATATTTTCGATAGCGATTTGGAAACCATAAAAAGCACGCGCCTCGGAGATCTGGACCTC 6287943 Query 46995 TGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGC 47054 | | || || ||| | |||||| ||||| ||||| || || ||||| || Sbjct 6287944 TTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGCGGCGAAAAAGGC 6288003 Query 47055 CAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATC 47114 | || || |||| || | | ||||||| || || | | ||||| | | ||| Sbjct 6288004 GAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGTTTCCCAGTGACGAAGATC 6288063 Query 47115 TTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATT 47174 | || | ||| ||||| || || ||||| || ||||| || ||||| || ||||| | Sbjct 6288064 TGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTTCTTGTACATTTC 6288123 Query 47175 CCATATATCACGATATTGGATCGGAAAAATA 47205 ||||| || | |||||||||||||| ||| Sbjct 6288124 CCATACTTCTGGGTATTGGATCGGAAACATA 6288154 >seq4 Length=78750349 Score = 129 bits (142), Expect = 8e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | ||||||| ||| | || | || |||||| | |||||| Sbjct 13233814 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACCCGCAGCATTGGGACAATGCCA 13233755 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 ||||||||||||||||||||| ||| ||||| | || |||||||| || || Sbjct 13233754 TTAGATGTACCATTTGTTCCACGAATGTAACTACTTGTAGCCCGAATATTGTGAACTGAG 13233695 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || ||| ||||| |||||| ||||| |||||||| || Sbjct 13233694 ACACCAATTCCTCCAGCTGATTTGCTGATTATAGCACACTCCTTCAAAGTGTCATATATT 13233635 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| ||||||||||| |||| || | ||| ||||| Sbjct 13233634 CCCTCGATACTATCATCTTTCATACACAGTAAAAAGCAGCT 13233594 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||||||||||| || |||| | | |||||||| || |||||| ||| ||| || Sbjct 13234299 CTCTCTTTCATAATGAATATACAGCTCCTCAAATTCTTCACCCCAACAATCTGCCAGTCC 13234240 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 ||| ||||||| ||||| | |||||||||| |||| || || | || ||| || Sbjct 13234239 TGGAGATTCATTAGGACAGAATAATGACCACTGCCCATTACTCTGGACTCTTTGCATGAA 13234180 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647 |||||||| | |||||||||| ||||||||| || Sbjct 13234179 AAGATCAGGCACCCATAGAGCATAAAATAGATCACG 13234144 Score = 95.1 bits (104), Expect = 2e-14 Identities = 93/119 (78%), Gaps = 6/119 (5%) Strand=Plus/Minus Query 76088 ATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAA 76147 || |||| |||||| || |||||||||||||||||||| |||||||| | | ||| || Sbjct 13235206 ATGAATGTATCTGCAAGCCCCTGAACTCCAATACCAATGGGTCTATGACGCAAATTTGAT 13235147 Query 76148 ATTT---CAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCT 76203 ||| ||| ||| || |||||| ||||||| ||| || ||||| || |||||||| Sbjct 13235146 CTTTTTGCAGTTTC---AACAGGGTAGTAATTAACATCAATTATTTTGTTAAGATTTCT 13235091 >seq25 Length=50193149 Score = 125 bits (138), Expect = 1e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||||| ||||| | ||| | || | || |||||| | ||| || Sbjct 26656092 CCTCCTTGATCAACATATCGAGCAGTATCATTGAACACCCGCAGCATTGGGACAATTCCA 26656033 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 ||||||||||||||||||||| ||||||||| || || |||||||| || ||| Sbjct 26656032 TTAGATGTACCATTTGTTCCACGAATATAACTACCTGTGGCTCGAATATTGTGAACAGAA 26655973 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || ||| ||| | |||||| ||||| || ||||| || Sbjct 26655972 ACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAAATT 26655913 Query 76934 CCCTCTATACTATCATCCATCATG 76957 || || ||||||||||| ||||| Sbjct 26655912 CCTTCAATACTATCATCTTTCATG 26655889 Score = 87.8 bits (96), Expect = 3e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||| || ||||| || | || ||||| ||||||||||||||| ||| ||| | | | Sbjct 26655750 AGTCCCAGCATTGAAAAGAGTGGGAGAAGCATGAGTGAACCATCTTTGAGACATCATGTG 26655691 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 || |||| ||| | | || || || | ||||||||| ||||| || | ||| || Sbjct 26655690 ATAAGTTTTTATAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCAACCCTCATTAA 26655631 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| |||||||| | ||||| | ||| | | |||||| | || || | |||| Sbjct 26655630 CATGTGCTGAGGCCTTTCTATAACCTTCCCTTGAACTTTCAAGAGATAAGACCTCTCCAG 26655571 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 77205 ||||| || ||||| || | ||| |||||| Sbjct 26655570 GGTTTTGAAGCCAAAGTAATCGTAGTCAAAGTC 26655538 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 75736 CAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAA 75795 ||| ||||| ||| | |||||||| ||||||||| || | ||||||| || || | Sbjct 26658072 CAAAACTCTACGACTATAAATATTGGAGGTATATGGCTCAAAGCATTCATTATTCCCAAG 26658013 Query 75796 AATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCAT 75854 ||| ||| |||||||||||| ||||||||||| | ||||| |||||| | |||| Sbjct 26658012 AATCTGACTAGTTGAAGCAGTTGGCATAGGTGCTAACAATAGTGAATTTCTCACTCCAT 26657954 >seq2 Length=106994729 Score = 125 bits (138), Expect = 1e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||||| ||||| | ||| | || | || |||||| | ||| || Sbjct 29496029 CCTCCTTGATCAACATATCGAGCAGTATCATTGAACACCCGCAGCATTGGGACAATTCCA 29495970 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 ||||||||||||||||||||| ||||||||| || || |||||||| || ||| Sbjct 29495969 TTAGATGTACCATTTGTTCCACGAATATAACTACCTGTGGCTCGAATATTGTGAACAGAA 29495910 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || ||| ||| | |||||| ||||| || ||||| || Sbjct 29495909 ACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATATATT 29495850 Query 76934 CCCTCTATACTATCATCCATCATG 76957 || || ||||||||||| ||||| Sbjct 29495849 CCTTCAATACTATCATCTTTCATG 29495826 Score = 91.5 bits (100), Expect = 2e-13 Identities = 93/120 (78%), Gaps = 6/120 (5%) Strand=Plus/Minus Query 76088 ATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAA 76147 || |||| ||||| || |||||||||||||||||||| || ||||| | | ||| || Sbjct 29497385 ATGAATGTGTCTGCAAGACCCTGAACTCCAATACCAATGGGCCTATGACGCAAATTTGAT 29497326 Query 76148 ATTT---CAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTG 76204 ||| ||| ||| || |||||| ||||||| ||| |||||||| || ||||||||| Sbjct 29497325 CTTTTGGCAGTTTC---AACAGGGTAGTAATTAACATCAATAATTTTGTTAAGATTTCTG 29497269 Score = 87.8 bits (96), Expect = 3e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||| || ||||| || | || ||||| ||||||||||||||| ||| ||| | | | Sbjct 29495687 AGTGCCAGCATTGAAAAGAGTGGGAGAAGCATGAGTGAACCATCTTTGAGACATCATGTG 29495628 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 || |||| ||| | | || || || | ||||||||| ||||| || | ||| || Sbjct 29495627 ATAAGTTTTTATAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCAACCCTCATTAA 29495568 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| |||||||| | ||||| | ||| | | |||||| | || || | ||||| Sbjct 29495567 CATGTGCTGAGGCCTTTCTATAACCTTCCCTTGAACTTTCAAGAGATAAGACCTCTCCAA 29495508 Query 77173 AGTTTTAAAACCAAAATA 77190 ||||| || ||||| || Sbjct 29495507 GGTTTTGAAGCCAAAGTA 29495490 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 75736 CAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAA 75795 ||| ||||| ||| | |||||||| ||||||||| || | ||||||| || || | Sbjct 29498009 CAAAACTCTGCGACTATAAATATTGGAGGTATATGGCTCAAAGCATTCATTATTCCCAAG 29497950 Query 75796 AATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCAT 75854 ||| ||| |||||||||||| ||||||||||| | ||||| |||||| | |||| Sbjct 29497949 AATCTGACTAGTTGAAGCAGTTGGCATAGGTGCTAACAATAGTGAATTTCTCACTCCAT 29497891 >seq19 Length=70911690 Score = 123 bits (136), Expect = 4e-23 Identities = 232/341 (68%), Gaps = 0/341 (0%) Strand=Plus/Minus Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686 || || ||||| || ||||| || |||||||||| | || || ||||| || || || Sbjct 44463880 AAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTT 44463821 Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAG 46746 | |||||||||| || |||||||| | ||||||||| || |||| || || || Sbjct 44463820 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCACAGAAACTGCCGGAGAAA 44463761 Query 46747 AATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA 46806 |||||||||||||| ||||| |||| | | || | || | | | Sbjct 44463760 AATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCCGCCGTCG 44463701 Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866 ||||| | ||||||||| || ||||| || || |||| ||||| |||| | Sbjct 44463700 ATCCATTTCAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAGCGTGG 44463641 Query 46867 AAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926 ||||| ||||||||| |||||||| ||| || || | | ||||||||||| Sbjct 44463640 AAGAGGCGGTTTTTTTCGGTGGAATCTTTAATATAAGTTTCGAGGAGGAGACTATACATC 44463581 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAA 46967 || || || || || || || || || || ||||| ||||| Sbjct 44463580 TCAGAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAA 44463540 >seq7 Length=42802127 Score = 120 bits (132), Expect = 4e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | ||||||| ||| | || | || |||||| | |||||| Sbjct 28741535 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACCCGCAGCATTGGGACAATGCCA 28741476 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 ||||||||||||||||||||| ||| ||||| | || |||||||| || || Sbjct 28741475 TTAGATGTACCATTTGTTCCACGAATGTAACTACTTGTAGCCCGAATATTGTGAACTGAG 28741416 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || ||| ||| | |||||| ||||| |||||||| || Sbjct 28741415 ACACCAATTCCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTGTCATATATT 28741356 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| ||||| ||||| |||| || | ||| ||||| Sbjct 28741355 CCCTCAATACTGTCATCTTTCATACACAGTAAAAAGCAGCT 28741315 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||||||||||| || |||| | | |||||||| || |||||| ||| ||| || Sbjct 28742020 CTCTCTTTCATAATGAATATACAGCTCCTCAAATTCTTCACCCCAACAATCTGCCAGTCC 28741961 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 | | ||||||| ||||| | |||||||||| |||| || || | || |||||| Sbjct 28741960 TGAAGATTCATTAGGACAGAATAATGACCACTGCCCATTACTCTGGACTCTTTGCATAAA 28741901 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647 |||||||| | |||||||||| ||||||||| || Sbjct 28741900 AAGATCAGGCACCCATAGAGCATAAAATAGATCACG 28741865 Score = 95.1 bits (104), Expect = 2e-14 Identities = 93/119 (78%), Gaps = 6/119 (5%) Strand=Plus/Minus Query 76088 ATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAA 76147 || |||| |||||| || |||||||||||||||||||| |||||||| | | ||| || Sbjct 28742932 ATGAATGTATCTGCAAGCCCCTGAACTCCAATACCAATGGGTCTATGACGCAAATTTGAT 28742873 Query 76148 ATTT---CAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCT 76203 ||| ||| ||| || |||||| ||||||| ||| || ||||| || |||||||| Sbjct 28742872 CTTTTTGCAGTTTC---AACAGGGTAGTAATTAACATCAATTATTTTGTTAAGATTTCT 28742817 >seq228 Length=356584 Score = 96.9 bits (106), Expect = 5e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686 || || ||||| || ||||| || |||||||||| | || || ||||| || || || Sbjct 282327 AAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTT 282386 Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAG 46746 | |||||||||| || |||||||| | ||||||||| || |||| || || || Sbjct 282387 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTGCCGGAGAAA 282446 Query 46747 AATATGCCTTCTACAGCCGCGAATGCGA 46774 |||||||||||||| ||||| |||| Sbjct 282447 AATATGCCTTCTACGCAAGCGAAAGCGA 282474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712852875951360