Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_031050.1 Length=51802 Score E Sequences producing significant alignments: (Bits) Value seq5259 105 2e-18 >seq5259 Length=4105 Score = 105 bits (116), Expect = 2e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 35590 AAGTTTTGGAAAAACTCGATCGCATCTTCGATTACGGTTTCTTTGCTTTGGTAGTAACGT 35649 ||||||| ||| || || || || || || ||| | | ||||||||||||||||||||| Sbjct 1687 AAGTTTTTGAAGAATTCAATTGCTTCCTCAATTCCAGGTTCTTTGCTTTGGTAGTAACGC 1628 Query 35650 AGCGTTTCCGCCACATCCTGCGCCAGCCCGTCAACTGTGATGGAATCGTGCAACAAGATC 35709 || |||||||| ||||| ||||||| || || || || | || || | ||||| |||| Sbjct 1627 AGAGTTTCCGCTACATCTTGCGCCATTCCATCGACAGTTAGCGAGTCATTCAACAGGATC 1568 Query 35710 ACATACTT 35717 ||||| || Sbjct 1567 ACATAATT 1560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 165626805591264