Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_031053.1 Length=50934 Score E Sequences producing significant alignments: (Bits) Value seq5259 96.9 1e-15 >seq5259 Length=4105 Score = 96.9 bits (106), Expect = 1e-15 Identities = 181/259 (70%), Gaps = 13/259 (5%) Strand=Plus/Minus Query 851 CATTAACCATCCGATACCCTTATCGGCACCGCAGCCGCTGCAATATGCC-CCGCCGTCGC 909 ||| ||| ||||||| || ||| ||||| | ||||| ||| |||||||||| Sbjct 353 CATGAACAATCCGATCCCTGAATCATTGCCGCACTGGTTGCAA-ATGTTTCCGCCGTCGC 295 Query 910 CGCGATTCTCT---AATTTGTCAGTCCAGCGGAAGCGATCCTTACCGCCGCAGTTAGGGC 966 | ||||| | ||||||||||||||| |||||||| ||||||||||| | ||||| Sbjct 294 CT---TTCTCGTTGATTTTGTCAGTCCAGCGAAAGCGATCTTTACCGCCGCAATAAGGGC 238 Query 967 AGTCCTGGTGTTTGCCGTTGAA-ATAGCGGGAGTGGATGCCGCAAATATTTTGTAGCGCC 1025 | ||||||||| ||||| || | ||| | || |||||| || || ||| Sbjct 237 AAGGCTGGTGTTTTCCGTTAAAGGTTAATTGAG-GAATATCGCAAAGTTTCATTAATGCC 179 Query 1026 TCTCGCCACATCCCCGGCATGTATGGCAAAACCTCTTTTTCGTCGTAAAAATCCACGTCA 1085 || ||||||| || |||| | ||| | | ||| ||| | | | ||| || || Sbjct 178 GCTTGCCACATGCCGCGCATCTTTGG---GATCACTTCTTCTTTTTGATAATGCATTTCT 122 Query 1086 TAACCTCCAAATAAAAAAC 1104 |||||||||||||||||| Sbjct 121 CAACCTCCAAATAAAAAAC 103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162849507328896