Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_031055.1 Length=43773 Score E Sequences producing significant alignments: (Bits) Value seq1219 82.4 2e-11 >seq1219 Length=45996 Score = 82.4 bits (90), Expect = 2e-11 Identities = 101/136 (74%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 31510 TCGAGTTAATAAAGATAAGAACTACACAACAATAAATAATACAGGCCTTAAAGATAAAAG 31569 |||||| | |||| || |||||| ||| || ||| |||| ||||| |||||| | Sbjct 38247 TCGAGTAAGTAAAAATTCTAACTACGTAACTATGAATCGGGCAGGGCTTAACGATAAACG 38188 Query 31570 GTTAAGTTGGAAAGCAAAAGGGATTTTAGCATACATTCTTACACTTCCTGATGATTGG-- 31627 | | ||||||||| ||||| | |||||||||| ||| || | |||||||||||| Sbjct 38187 GCTTTCTTGGAAAGCGAAAGGTTTACTAGCATACATGCTTTCAATGCCTGATGATTGGAC 38128 Query 31628 GTTTT-TTATAGAGAG 31642 ||||| | ||| |||| Sbjct 38127 GTTTTATGATACAGAG 38112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139936796664360