Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq2479 134 9e-27 seq1049 116 2e-21 >seq2479 Length=13031 Score = 134 bits (148), Expect = 9e-27 Identities = 289/430 (67%), Gaps = 4/430 (1%) Strand=Plus/Minus Query 58576 CCAGACGTAATCGCCGGTTAGGTTGATGTGCTCCCAGCCCAGCGGCGACAGGAATTGCAG 58635 ||||||||| |||||||| || |||||| | ||||||||||| ||||| ||| || Sbjct 10709 CCAGACGTAGTCGCCGGTCAGATTGATGCGATCCCAGCCCAGGGGCGAGAGGCGGGAGAG 10650 Query 58636 CAGCTCGCCG--TCCACCGGCTTGCCGGCCTCGACCAACCCCTGGGTGGCGCGTTCCAGG 58693 || | |||| || | ||| |||| | || ||| | ||||||| | || Sbjct 10649 CA--TGGCCGGATCGATCGGGATGCCCCGATGCCGCATGTCCTCGATGGCGCGGCCGAGA 10592 Query 58694 TACACCGTGTTCCACAGCACGATAGCCGCCGTCACCAGGTTGAGGCCGCTGGCCCGGTAG 58753 || ||| |||| | ||| || || || || ||||||||| | ||| ||| Sbjct 10591 TAGCGGCAGTTGAACAGGATGATGGCGGCGGTGACGAGGTTGAGGGCTGCGGCGCGGGTC 10532 Query 58754 CGCTGCTGCTCGAAGCTCCGATCCCTGATTTCCCCAAGGCGGTTGAAGAACACCGCCCTG 58813 |||| | ||||| | ||||| | || || ||||||| |||| || || | Sbjct 10531 TGCTGGTTCTCGAGCCCGCGATCGCGGAAGCGACCGAGGCGGTGGAAGGCGACGGCACGT 10472 Query 58814 GCCAGCGAGTTGCGCGCCTCACCTTTGTTCAGGCCGGCATGCACGCGGCGGCGCAGTTCA 58873 || || || ||| || | || |||||||| |||| ||| ||| ||||| || Sbjct 10471 GCGAGGCTGTCGCGTGCTTTGCCCTTGTTCAGTTCGGCGGTGACGGTGCGACGCAGGTCG 10412 Query 58874 ACACTTTGCAGCCAGTCCAGGATGAACAGCGTGCGCTCGATCCGGCCCAGCTCGCGCAGG 58933 | | | |||| ||| |||||||||||||||||||||| || | |||||||| Sbjct 10411 GCGTCCTCGAACCAGCGCAGCGTGAACAGCGTGCGCTCGATCCGCCCTATCTCGCGCAAC 10352 Query 58934 GCCACGGCCAGTCCGTTCTGGCGCGGGTAGCTGCCGAGCTTGCGCAGCATCAGCGAGGCG 58993 ||| ||||||| | |||||| | | ||| | |||||| | || |||||||||| Sbjct 10351 GCCGCGGCCAGGCTGTTCTGCTGGCGATAGGCGGAGAGCTTTCCGAGGATCAGCGAGGGT 10292 Query 58994 GTGACGGTGC 59003 |||||||||| Sbjct 10291 GTGACGGTGC 10282 >seq1049 Length=57459 Score = 116 bits (128), Expect = 2e-21 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 58787 CCAAGGCGGTTGAAGAACACCGCCCTGGCCAGCGAGTTGCGCGCCTCACCTTTGTTCAGG 58846 || ||||| | |||| || || | |||||| |||||||||||| || ||||| || Sbjct 41010 CCGAGGCGATGGAAGGCGACGGCGCGGGCCAGGCTGTTGCGCGCCTCGCCCTTGTTGAGT 41069 Query 58847 CCGGCATGCACGCGGCGGCGCAGTTCAACACTTTGCAGCCAGTCCAGGATGAACAGCGTG 58906 |||| || |||||||||| | | || | |||| || ||||||||||| Sbjct 41070 TCGGCGGTTACCATGCGGCGCAGTGCCGGATCTTCGAACCAGCGCAACGTGAACAGCGTG 41129 Query 58907 CGCTCGATCCGGCCCAGCTCGCGCAGGGCCACGGCCAGTCCGTTCTGGCGCGGGTA-GCT 58965 |||||||| ||||| | |||||| || ||| ||||||| | |||||| | |||| || Sbjct 41130 CGCTCGATGCGGCCGACCTCGCGAAGCGCCGCGGCCAGACTGTTCTGCTGGCGGTAGGCC 41189 Query 58966 GCCGAGCTTGCGCAGCATCAGCGAGGCGGTGACGGTGC 59003 ||| ||||| || || |||||||| | || ||||||| Sbjct 41190 GCC-AGCTTCCGGAGGATCAGCGACGGCGTCACGGTGC 41226 Score = 104 bits (114), Expect = 2e-17 Identities = 289/435 (66%), Gaps = 14/435 (3%) Strand=Plus/Minus Query 58576 CCAGACGTAATCGCCGGTTAGGTTGATGTGCTCCCAGCCCAGCGGCGACAGGAATTGCAG 58635 |||||| || |||||||| ||||||||| | |||||||| |||||||| || |||| Sbjct 46822 CCAGACATAGTCGCCGGTGAGGTTGATGCGGTCCCAGCCGAGCGGCGAGAG---TTGCGC 46766 Query 58636 CAGC-TCGCCG--TCCACCGGCTTGCC--GGCCTCGACCAACCCCTGGGTGGCGCGTTCC 58690 | || | |||| || ||||| |||| ||| || | | | |||| | Sbjct 46765 CTGCATGGCCGGGTCGACCGGTCTGCCCTGGCGCCGGAGTTCGTCAAGC--GCGCAGCCG 46708 Query 58691 AGGTACACCGTGTTCCACAGCACGATAGCCGCCGTCACCAGGTTGAGGCCG-CTG-GCCC 58748 || || ||| |||| | ||| || || || || ||||||||| || ||| || | Sbjct 46707 AGATAGCGGCAGTTGAACAGGATGATGGCAGCGGTGACGAGGTTGAGGGCGGCTGCGCGC 46648 Query 58749 GGTAGCGCTGCTGCTCGAAGCTCCGATCCCTGATTTCCCCAAGGCGGTTGAAGAACACCG 58808 | | | || | ||| || | ||||| | || || || || | ||| || | Sbjct 46647 GTTTTC--TGGTTCTCCAACCCGCGATCACGGAAGCGGCCGAGACGATGGAATGCGACGG 46590 Query 58809 CCCTGGCCAGCGAGTTGCGCGCCTCACCTTTGTTCAGGCCGGCATGCACGCGGCGGCGCA 58868 ||| ||||| |||||||||||| || |||||||| |||| || |||||||| Sbjct 46589 CCCGAGCCAGACTGTTGCGCGCCTCGCCCTTGTTCAGTTCGGCGGTGACCGTGCGGCGCA 46530 Query 58869 GTTCAACACTTTGCAGCCAGTCCAGGATGAACAGCGTGCGCTCGATCCGGCCCAGCTCGC 58928 | | || | |||| ||| ||||||| ||||||||||| || || | ||||| Sbjct 46529 GCCCCGGGTCTTCGAACCAGCGCAGCGTGAACAGGGTGCGCTCGATGCGTCCGACCTCGC 46470 Query 58929 GCAGGGCCACGGCCAGTCCGTTCTGGCGCGGGTAGCTGCCGAGCTTGCGCAGCATCAGCG 58988 |||| || ||||||| | |||||| | | ||| | | ||||| ||| |||| || Sbjct 46469 GCAGTGCGGCGGCCAGGCTGTTCTGCTGGCGATAGGCGGCCAGCTTCTTCAGGATCAACG 46410 Query 58989 AGGCGGTGACGGTGC 59003 | | || ||||||| Sbjct 46409 ACGGCGTCACGGTGC 46395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330862307634568