Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq14 132 4e-26 seq13 118 9e-22 seq11 113 4e-20 seq18 107 2e-18 seq25 98.7 8e-16 seq1 98.7 8e-16 seq23 95.1 1e-14 seq168 89.7 4e-13 seq19 89.7 4e-13 seq24 86.0 5e-12 >seq14 Length=44799946 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| ||||||||||| || |||||||||||||| || ||| |||| ||| | | Sbjct 8848130 ATGCAGATTTTTGTCAAGACTTTGACCGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 8848071 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | | || || ||| ||| || || ||||| | || ||||| Sbjct 8848070 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 8848011 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 |||||||| || | ||| |||||||||||||||||| | ||| |||| |||||||| Sbjct 8848010 CAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 8847951 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327 || || ||||| |||||||| || | || | ||||| || |||||| Sbjct 8847950 ATTCAGAAAGAGTCTACACTTCACCTTGTTCTTCGTCTCCGTGGTGGC 8847903 >seq13 Length=56485995 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| ||||||||||| || ||||| |||||||| || ||| |||| ||| | | Sbjct 54271004 ATGCAGATTTTTGTCAAGACTTTGACAGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 54271063 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | | || || ||| ||| || || ||||| | || ||||| Sbjct 54271064 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 54271123 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 |||| ||| || | ||| |||||||||||||||||| | ||| |||| |||||||| Sbjct 54271124 CAAATGCTCATCTCTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 54271183 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327 || || ||||| ||||| || || | || | ||||| || |||||| Sbjct 54271184 ATTCAGAAAGAGTCTACCCTTCACCTTGTTCTTCGTCTCCGTGGTGGC 54271231 >seq11 Length=95484752 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| ||||| ||||| |||||||| || |||||||| || |||| ||| | Sbjct 29434889 ATGCAGATTTTCGTCAAGACGTTGACTGGGAAAACCATAACTTTGGAGGTGGAGAGTTCC 29434948 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | | | | | || || || ||| ||||||||||| |||| ||||| Sbjct 29434949 GATACGATCGACAATGTTAAGGCGAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAG 29435008 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 |||||| | |||| || || ||||||||||||||| | ||| |||| ||||| ||| Sbjct 29435009 CAAAGGTTGATTTTCGCTGGGAAACAATTGGAAGATGGAAGGACTTTGGCTGATTACAAT 29435068 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || ||||| || || || | || |||||||| || ||||| Sbjct 29435069 ATTCAGAAGGAATCCACTCTCCACCTTGTCTTGCGTCTTCGGGGTGG 29435115 >seq18 Length=57801308 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| ||||| ||||| |||||||| || |||||||| || |||| ||| | Sbjct 49488915 ATGCAGATTTTCGTCAAGACGTTGACTGGGAAAACCATAACTTTGGAGGTGGAGAGTTCC 49488974 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | | | | | || || || ||| ||||||||||| |||| ||||| Sbjct 49488975 GATACGATCGACAATGTTAAGGCGAAGATTCAGGACAAAGAAGGGATTCCACCAGATCAG 49489034 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 |||||| | |||| || || ||||| ||||||||| | ||| |||| ||||| ||| Sbjct 49489035 CAAAGGTTGATTTTCGCTGGGAAACAGTTGGAAGATGGAAGGACTTTGGCTGATTACAAT 49489094 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || ||||| || || || | || |||||||| || ||||| Sbjct 49489095 ATTCAGAAGGAATCCACTCTCCACCTTGTCTTGCGTCTTCGTGGTGG 49489141 >seq25 Length=50193149 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||||||||| | || || || || |||||| |||| || Sbjct 28160263 ATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACAATTACCTTGGAGGTCGAGAGTTCG 28160322 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | | || ||| || ||| ||||||||||| | || || ||| Sbjct 28160323 GATACCATTGACAATGTGAAAGCCAAGATTCAGGACAAAGAAGGAATCCCACCAGACCAA 28160382 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| | |||| ||| || |||||| | |||||| | |||| | |||||||||||| Sbjct 28160383 CAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTGCCGATTATAAT 28160442 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || || ||||| || ||||| || | || || || ||||| Sbjct 28160443 ATCCAGAAGGAGTCTACTCTCCATTTGGTTCTCCGCCTTCGGGGTGG 28160489 >seq1 Length=92291805 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| ||||| | || || |||||||| ||| | || |||| | | Sbjct 4410027 ATGCAGATCTTTGTGAAAACCCTTACTGGTAAAACCATCACCCTTGAGGTGGAAAGCTCC 4409968 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | || || ||||| |||||||||||| |||| || ||| Sbjct 4409967 GATACTATTGATAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAA 4409908 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || |||||||||| ||| || |||||| | || ||| |||| | ||||| || || Sbjct 4409907 CAGAGGCTTATTTTTGCCGGAAAACAACTCGAGGATGGCCGAACTCTTGCCGACTACAAC 4409848 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || ||||| || || || || || |||| | ||||| | ||||||| Sbjct 4409847 ATCCAAAAGGAGTCCACCCTCCACCTAGTCCTTCGTCTAAGGGGTGGCA 4409799 >seq23 Length=61753794 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||||||||| | || || || || |||||| |||| ||| Sbjct 39554211 ATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACAATTACCTTGGAGGTGGAGAGTTCG 39554152 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || ||| || ||| ||||||||||| | || || ||| Sbjct 39554151 GATACCATTGATAATGTGAAAGCCAAGATTCAGGACAAAGAAGGAATCCCACCAGACCAA 39554092 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| | |||| ||| || |||||| | |||||| | ||| | |||||||||||| Sbjct 39554091 CAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTGCCGATTATAAT 39554032 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || || ||||| || ||||| || | || || || ||||| Sbjct 39554031 ATCCAGAAGGAGTCTACTCTCCATTTGGTTCTCCGCCTTCGTGGTGG 39553985 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| |||||| | || || |||||||| || | || ||| Sbjct 11030588 ATGCAGATCTTTGTAAAAACGCTCACTGGAAAAACCATCACTTTAGAGGTGGAGAGTTCT 11030647 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || || || ||| ||||| || ||| | || || || Sbjct 11030648 GATACAATTGATAACGTTAAGTCCAAGATTCAGGACAAGGAGGGCATCCCACCAGACCAG 11030707 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||| | |||| ||| || |||||| | |||||| | ||| | || || ||||| Sbjct 11030708 CAGAGGTTAATTTTTGCTGGGAAACAACTTGAAGATGGCAGAACCCTTGCAGACTATAAC 11030767 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| |||||||| || ||||| ||||||||||| || ||||| Sbjct 11030768 ATTCAAAAGGAATCTACCCTCCATTTGGTGTTGCGTCTTCGTGGTGG 11030814 >seq168 Length=529997 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || || ||||| || |||||||| || |||||||| | ||| ||| | Sbjct 131603 ATGCAGATCTTCGTCAAGACTTTGACCGGTAAGACCATTACTTTAGAAGTGGAGAGCTCG 131662 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || ||| || ||| ||||||||||| |||| | ||| Sbjct 131663 GATACGATTGATAACGTGAAAGCGAAGATTCAGGACAAAGAAGGAATTCCACCAGGTCAG 131722 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 |||||| | |||| ||| || ||||| |||||||| | ||| |||| |||| ||| Sbjct 131723 CAAAGGTTGATTTTTGCTGGGAAACAGCTGGAAGATGGAAGGACTTTGGCTAATTACAAT 131782 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| || || || || || | || | ||||| || ||||| Sbjct 131783 ATTCAAAAGGAGTCCACTCTTCACCTTGTTCTTCGTCTTCGTGGTGG 131829 >seq19 Length=70911690 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| || || | ||||| || || ||||| ||||| || Sbjct 3137722 ATGCAAATTTTTGTGAAGACTCTCACCGGAAAGACTATTACTTTGGAAGTTGAGAGTTCT 3137663 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | |||| | | |||||| || || ||||| ||||| |||| ||||| Sbjct 3137662 GACACCGTTGACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGGATTCCACCAGATCAG 3137603 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||| | |||| ||| |||||||| | |||||| || || | || ||||||||| Sbjct 3137602 CAGAGGTTGATTTTTGCTGGCAAACAGCTCGAAGATGGTAGGACACTTGCAGATTATAAT 3137543 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || ||||| ||||| || || || ||| | || || || || || Sbjct 3137542 ATCCAGAAAGAGTCTACCCTCCACTTGGTGCTCCGACTTCGAGGAGG 3137496 >seq24 Length=55877068 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGA--AACGGAACCC 111156 ||||||||||||||| || || ||||| || || |||||||| |||| | || | Sbjct 24584307 AATGCAAATTTTTGTTAAGACTTTGACTGGGAAGACCATTACATTGGAGGTAGAGAGTTC 24584366 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 | ||| | ||| | | || || ||||||| ||||| || || | ||| || Sbjct 24584367 A--GATACCATTGACAATGTTAAGGCAAAAATTCAGGACAAGGAGGGAATCCCCCCAGAC 24584424 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276 ||||| ||||| |||| ||| || || ||| |||| ||| || |||| || ||| Sbjct 24584425 CAACAGAGGCTGATTTTTGCTGGTAAGCAACTGGAGGATGGCCGTACCCTGGCTGACTAT 24584484 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || || || || || || || || ||| | ||||| || ||||| Sbjct 24584485 AACATCCAGAAGGAGTCCACCCTCCACTTGGTGCTTCGTCTTCGTGGTGG 24584534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421764171742048