Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1 141 2e-28 seq8 107 4e-18 seq9 105 1e-17 seq4 105 1e-17 seq11 104 5e-17 seq10 104 5e-17 seq6 104 5e-17 >seq1 Length=55868233 Score = 141 bits (156), Expect = 2e-28 Identities = 574/885 (65%), Gaps = 31/885 (4%) Strand=Plus/Plus Query 229753 TCTGC--GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAA 229810 ||||| ||||||||||||||| || | || ||||| ||||||||||| || | || Sbjct 54862166 TCTGCATGTTCCCAATCCAATACCCACAGATATGGGAAATGTACAAGAAAGCCGAAGCCT 54862225 Query 229811 CTTTCTGGACCACTGAGGAAGTTCCTCTGAACGCAGA-CGTCGTCGACTGGCGTGAGAAA 229869 |||| ||||| | ||||||||| ||| | || | || | |||||| | || Sbjct 54862226 CTTTTTGGACTGCCGAGGAAGTTGATCTCTCTTCCGATCTTCCAC-ACTGGC---AAAAT 54862281 Query 229870 CTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGAT 229929 || || | ||||||||| || ||||||| || |||| | || ||||| | |||||| Sbjct 54862282 CTTAACGCCGACGAACGCCACTTCATCAGTCATGTCCTTGCCTTCTTCGCCGCATCCGAT 54862341 Query 229930 GGTATTGTGATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGC 229988 || || || | |||||||| || | | ||| | || || | | ||||| Sbjct 54862342 GGCATCGTCCTAGAAAATCTCGCCGTTC-GCTTCATGAAAGAGGTCCAAATCGCGGAGGC 54862400 Query 229989 ACGGCAATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCT 230048 || |||||||| | ||||| || ||| |||||| ||||| ||| ||| Sbjct 54862401 GCGTGCATTTTATGGATTCCAAATCGCCATCGAGAATATCCACTCTGAGATGTATAGTCT 54862460 Query 230049 GCTTATCGACGCGCTTATTTCCGA--CGAGCAAGAACGGAACGAGCTTTTTGATGCCATT 230106 || |||| | |||| || | | | ||| |||| || || | || | | Sbjct 54862461 CCTCCTCGAAACTTATATTAAAGATTCCACC--GAAAAGAACCGCCTCTTCCACGCTACT 54862518 Query 230107 GAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGGT 230166 |||| | ||| || ||| || || | |||||| ||||||| | || || Sbjct 54862519 GAAACGGTGCCGTGCGTGGCTAAAAAAGCCGATTGGGCTTTGAAATGGATCGACGGCGGC 54862578 Query 230167 AAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGG 230226 || | |||||||| || | |||| | | || || ||||| || | || ||||| Sbjct 54862579 GAAGCTTTTGCCGAACGGTTAATCGCTTTCGCTTGCGTAGAAGGCATATTTTTCTCCGGC 54862638 Query 230227 AGTTTCTGCGCCATCTTTTGGCTGCGGAACAAA----GGTGTGATGCCTGGCCTCGGTCT 230282 |||||||| || || |||||| | || ||| || | |||||||| | | Sbjct 54862639 AGTTTCTGTGCGATATTTTGGTT----AAAAAAGCGCGGGTTAATGCCTGGATAAACTTT 54862694 Query 230283 GTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTT-ATGT 230341 || ||| |||| ||| ||| || || ||||||||| | || || |||| ||| Sbjct 54862695 CTCAAACAAGTTGATCTCTCGAGATGAAGGTCTCCATTGCGACTT-TGCTTGCTTGCTGT 54862753 Query 230342 ATTCAAAGCTCCAGAACAAGCTACCATTCGAGA-CG-GTCAAACAAATCATTACAGAAGC 230399 | || |||||| |||||| | | ||| || || || ||| | | || || Sbjct 54862754 ACTCTCTCCTCCAGTCAAAGCTA--AGTGAAGAGCGCGTGAAGGGAATAGTGAGGGATGC 54862811 Query 230400 AGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTA-TTGGCATGA 230458 || || || | |||||| | || |||||| |||| || ||| ||| |||| |||| Sbjct 54862812 GGTGGATGTAGAGAGGGAGTTTGTATGCGACGCTCTTCCCTG-CGCGTTAGTTGGGATGA 54862870 Query 230459 ACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTG 230518 ||| ||| | ||| | || ||||| || ||||| || || || | | | || | | Sbjct 54862871 ACGGTGAGTTGATGAGTCAATACATTGAGTTCGTTGCGGATCG--GTATAGGAGCTTTAG 54862928 Query 230519 GTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTC 230578 | || | ||| ||||||| | ||||| |||| | ||||| || ||||| | | Sbjct 54862929 GGTATGGCAAAATGTACAATGCGGCTAACCCTTTTGATTGGATGGAACTAATTTCATTGC 54862988 Query 230579 AAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 ||||||| ||||| |||||||| ||| | || | || ||||||| Sbjct 54862989 AAGGGAAAACCAATTTCTTCGAGAAGAGAGTTGGGGAGTATCAGA 54863033 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 24654722 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 24654663 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 24654662 CCCACGGTGGGC 24654651 >seq8 Length=57128820 Score = 107 bits (118), Expect = 4e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||||||||||||||||||||||||| || || |||| || |||||||||||||||| Sbjct 43326680 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 43326621 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 43326620 GCCCCACGGTGGGC 43326607 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 52840814 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 52840755 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 52840754 CCCACGGTGGGC 52840743 >seq9 Length=70713020 Score = 105 bits (116), Expect = 1e-17 Identities = 75/86 (87%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 165700 TAAAACG----CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGG 165755 ||||||| || ||||||||||||||||||||||||||| || || |||| || |||| Sbjct 17002910 TAAAACGACTACTAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGG 17002969 Query 165756 TCGTGGGTTCGAGCCCCACGATGGGC 165781 |||||||||||||||||||| ||||| Sbjct 17002970 TCGTGGGTTCGAGCCCCACGGTGGGC 17002995 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 10323165 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 10323106 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 10323105 CCCACGGTGGGC 10323094 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 18872533 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 18872474 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 18872473 CCCACGGTGGGC 18872462 >seq4 Length=62178258 Score = 105 bits (116), Expect = 1e-17 Identities = 75/85 (88%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 165697 ACTTAAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGT 165756 ||||| ||| | ||||||||||||||||||||||||||| || || |||| || ||||| Sbjct 53263397 ACTTACAAC-CAGGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGT 53263339 Query 165757 CGTGGGTTCGAGCCCCACGATGGGC 165781 ||||||||||||||||||| ||||| Sbjct 53263338 CGTGGGTTCGAGCCCCACGGTGGGC 53263314 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 3504725 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3504666 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3504665 CCCACGGTGGGC 3504654 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 45239864 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 45239923 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 45239924 CCCACGGTGGGC 45239935 >seq11 Length=62681010 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 59161410 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 59161469 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 59161470 CCCACGGTGGGC 59161481 >seq10 Length=62175169 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 2007137 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2007196 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2007197 CCCACGGTGGGC 2007208 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 3925352 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3925293 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3925292 CCCACGGTGGGC 3925281 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 3925502 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3925443 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3925442 CCCACGGTGGGC 3925431 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 56539838 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 56539779 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 56539778 CCCACGGTGGGC 56539767 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 56546961 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 56546902 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 56546901 CCCACGGTGGGC 56546890 Score = 100 bits (110), Expect = 6e-16 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 3925660 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3925601 Query 165770 CCCACGATGG 165779 |||||| ||| Sbjct 3925600 CCCACGGTGG 3925591 >seq6 Length=51074515 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 43204915 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 43204856 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 43204855 CCCACGGTGGGC 43204844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057809985815420