Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_000902.1 Length=60942 Score E Sequences producing significant alignments: (Bits) Value seq2 352 1e-92 >seq2 Length=62769430 Score = 352 bits (390), Expect = 1e-92 Identities = 218/233 (94%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 10904 CCAAACGTCTCTTCAGGCCATTGGCTGGCGATAACTTTCCCCACAACGGAACAACTCTCA 10963 |||||||||||||||||||| || || ||||||||||||||||||||||||||||||||| Sbjct 60927463 CCAAACGTCTCTTCAGGCCACTGACTAGCGATAACTTTCCCCACAACGGAACAACTCTCA 60927522 Query 10964 TTGCATGGGATCATTGGATATTGCGGGTTTAGTGGTTGTAGAAACACCTGACCGCTATCC 11023 ||||||||||||||||| || || |||||||||||||||| ||||||||||||||||||| Sbjct 60927523 TTGCATGGGATCATTGGGTACTGTGGGTTTAGTGGTTGTAAAAACACCTGACCGCTATCC 60927582 Query 11024 CTGATCAGTTTCTTGAAGGTAAATTCATCACCACCAAGTCTGGCTATGCAGAAATCGCCG 11083 ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || Sbjct 60927583 CTGATCAGTTTCTTGAAGGTAAACTCATCACCCCCAAGTCTGGCTATGCAGAAATCACCT 60927642 Query 11084 GGCTCAACAGCTTGCTCAGGGTCAACCAGAATTAACATCCCGTCAGGAAAACT 11136 ||||||||||| |||||||||||||| ||||||||||| ||||||||||| || Sbjct 60927643 GGCTCAACAGCCTGCTCAGGGTCAACGAGAATTAACATTCCGTCAGGAAAGCT 60927695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194890406960032