Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq11 107 2e-18 >seq11 Length=62681010 Score = 107 bits (118), Expect = 2e-18 Identities = 302/456 (66%), Gaps = 7/456 (2%) Strand=Plus/Minus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || || ||||||||||| || | || || |||| ||| | ||||| || | Sbjct 8942328 ACAGCAAGCAAGCGAAATCGCAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGA 8942269 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | || || |||||||| || | || |||||||||||||| || ||| || | Sbjct 8942268 AAGTTAATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGG 8942209 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | || || || || || ||| | ||||| |||||||| ||||||||| | || | | Sbjct 8942208 AGAAAAAGATCCCTTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGC 8942149 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 || || ||||||||| ||||||||||||||| | || || ||| || | Sbjct 8942148 CGT--CG-ATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGA 8942092 Query 17196 TGGC-CTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 |||| | ||| | || ||||| | || |||| || || |||| || || Sbjct 8942091 TGGCGCGGAAAAGACGGTTC-TTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGA 8942033 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGT-AAAAGCATCGGGC 17313 |||||||| |||||||| || || || || || || || || || | ||||||| || || Sbjct 8942032 CTGTACATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCA-CGCGC 8941974 Query 17314 TTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTC 17373 || | || || || || ||| || | || || || || || ||||| || Sbjct 8941973 CTCGGAGATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATC 8941914 Query 17374 GCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 | ||||||||||| || | | || ||||||| Sbjct 8941913 GGAGGCGGCGAAAAAGGCGAGAACGTGACTAATGAA 8941878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517538910723120