Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1 118 1e-21 seq11 116 4e-21 >seq1 Length=55868233 Score = 118 bits (130), Expect = 1e-21 Identities = 384/584 (66%), Gaps = 22/584 (4%) Strand=Plus/Minus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 || || ||||||||||| || ||||| |||| ||| | | ||| || |||||| | Sbjct 54862745 CAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTTGTTTGAGAAAGTTTAT 54862686 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCA--GCAAATGACCCCGAAAAGA 16319 || |||||| || || || |||||||| ||||||||| | || || || || || | Sbjct 54862685 CCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCACAGAAACTG--CCGGAGAAAA 54862628 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTA--CGTAGCATCTTTATT 16377 |||| || || || | || ||||||||||| ||||| || | | | || | | Sbjct 54862627 ATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCCGCCGT--- 54862571 Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437 || ||||||||| |||| |||||||||| | || || |||||| | || Sbjct 54862570 -CG-ATCCATTTCAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAGC 54862513 Query 16438 CTTAAACA-ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGT 16496 | || | |||||| || | ||| | ||||| || || | || | ||| | Sbjct 54862512 GTGGAAGAGGCGGTTCTTTTCGGTGGA-ATCTTTAATATAAGTTTCGAGGAGGAGACTAT 54862454 Query 16497 ACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAA-GCATCGAGCCTCC 16555 |||| || ||||| || ||||| ||||| || || |||||||| || ||| || |||||| Sbjct 54862453 ACATCTCAGAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAATGCA-CGCGCCTCC 54862395 Query 16556 GCTATTTGTA---CTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCA 16612 || ||||| | ||| || | || || | || || || || ||||| || || Sbjct 54862394 GCGATTTGGACCTCTTTCATG---AAGCGAACGGCGAGATTTTCTAGGACGATGCCATCG 54862338 Query 16613 CTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATA 16672 ||| || || || || | | || | ||||| | |||||| | ||||| | Sbjct 54862337 GATGCGGCGAAGAAGGCAAGGACATGACTGATGAAGTGGCGTTCGTCGGCGTTAAGATTT 54862278 Query 16673 TGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACT 16732 ||||| | | | ||| || | ||| ||||| || | |||||||| || | Sbjct 54862277 TGCCAGTGTGGAAGATCGGAAGAGAGATCAACTTCCTCGGCAGTCCAAAAAGAGGCTTCG 54862218 Query 16733 GCCTTTTTATACATTTTCCAAATATCATTGTATTGTA-TGGGAA 16775 || || || ||||||| ||| || | |||||| | |||||| Sbjct 54862217 GCTTTCTTGTACATTTCCCATATCTGTGGGTATTGGATTGGGAA 54862174 >seq11 Length=62681010 Score = 116 bits (128), Expect = 4e-21 Identities = 379/580 (65%), Gaps = 13/580 (2%) Strand=Plus/Minus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 || ||||| ||||| || || ||||| |||| ||| | ||||| || |||||||| Sbjct 8942320 CAAGCGAAATCGCAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTTAAT 8942261 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAAT 16321 || |||||| || | || |||||||| ||||| ||| || || || || || Sbjct 8942260 CCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAG 8942201 Query 16322 ATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA 16381 || || || || | |||||||||||||| ||||| ||| | || | | | || Sbjct 8942200 ATCCCTTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCGT--CG- 8942144 Query 16382 ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC-CTT 16440 ||||||||| |||| |||||||||| | ||| || ||| || ||||| | Sbjct 8942143 ATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCGCGG 8942084 Query 16441 AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACAT 16500 ||| | || ||||| | ||| |||| || || || | || | ||||||||| Sbjct 8942083 AAAAGACGGTTC-TTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTACAT 8942025 Query 16501 TTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCAT-AGAAGCATCGAGCCTCCGCTA 16559 || ||||| || || || || || || || || |||| | ||||| || ||||| | | Sbjct 8942024 CTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCA-CGCGCCTCGGAGA 8941966 Query 16560 TTTGTA---CTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTG 16616 | || | ||| || | || || | || ||||||||| || || || || | Sbjct 8941965 TCTGGACCTCTTTCATG---AACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGG 8941909 Query 16617 CAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCC 16676 | || ||||| || | | ||| ||||||| | | || || | || ||| | | || Sbjct 8941908 CGGCGAAAAAGGCGAGAACGTGACTAATGAAGTGGTGCTCATCGGCGGTGAGAGTTTCCC 8941849 Query 16677 AATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736 | | | ||| || | ||| ||||| |||| |||||||| || | || | Sbjct 8941848 AGTGACGAAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTT 8941789 Query 16737 TTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776 | || ||||||| ||| | || |||||| || ||||| Sbjct 8941788 TCTTGTACATTTCCCATACTTCTGGGTATTGGATCGGAAA 8941749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511407789968880