Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq7 91.5 1e-13 seq2 86.0 5e-12 seq13 82.4 6e-11 >seq7 Length=60982465 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 ||||||||||||||||| || | ||||| ||| ||||||||||||||||| || || Sbjct 47413606 ACATGAGCAATCATGCATGTCAGAAGAGCATAAGATGCAATGTTAAATGGCACACCCAAG 47413547 Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGA 101850 ||||||||||| || | ||||||| ||| || || Sbjct 47413546 CCCATATCAGCAGAACGCTGATACATTTGGCAAGA 47413512 >seq2 Length=62769430 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 ||||||||||||||||| || | |||| ||| ||||||||||||||||| || || Sbjct 334756 ACATGAGCAATCATGCATGTCAGGAGAGCATAAGATGCAATGTTAAATGGCACACCCAAG 334697 Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGA 101850 ||||||||||| || | ||||||| ||| || || Sbjct 334696 CCCATATCAGCAGAACGCTGATACATTTGGCAAGA 334662 >seq13 Length=58321163 Score = 82.4 bits (90), Expect = 6e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 ||||||| ||||||||| || | |||| ||| ||||||||||||||||| || || Sbjct 55501856 ACATGAGTAATCATGCATGTCAGGAGAGCATAAGATGCAATGTTAAATGGCACACCCAAG 55501797 Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGA 101850 ||||||||||| || | ||||||| ||| || || Sbjct 55501796 CCCATATCAGCAGAACGCTGATACATTTGGCAAGA 55501762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361246647557534