Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_001416.1 Length=48502 Score E Sequences producing significant alignments: (Bits) Value seq2 884 0.0 >seq2 Length=62769430 Score = 884 bits (980), Expect = 0.0 Identities = 497/499 (99%), Gaps = 2/499 (0%) Strand=Plus/Plus Query 36965 ATCGATTTTATGAATATACAAATAATTGGAGCCAACCTGCAGGTGATGATTATCAGCCAG 37024 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 60927199 ATCGATTTTATGAATATACAA-TAATTGGAGCCAACCTGCAGGTGATGATTATCAGCCAG 60927257 Query 37025 CAGAGAATTAAGGAAAACAGACAGGTTTATTGAGCGCTTATCTTTCCCTTTATTTTTGCT 37084 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 60927258 CAGAGAATTAAGGAAAACAGACAGGTTTATTGAGCGCTTATCTTTCCCTT-ATTTTTGCT 60927316 Query 37085 GCGGTAAGTCGCATAAAAACCATTCTTCATAATTCAATCCATTTACTATGTTATGTTCTG 37144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60927317 GCGGTAAGTCGCATAAAAACCATTCTTCATAATTCAATCCATTTACTATGTTATGTTCTG 60927376 Query 37145 AGGGGAGTGAAAATTCCCCTAATTCGATGAAGATTCTTGCTCAATTGTTATCAGCTATGC 37204 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60927377 AGGGGAGTGAAAATTCCCCTAATTCGATGAAGATTCTTGCTCAATTGTTATCAGCTATGC 60927436 Query 37205 GCCGACCAGAACACCTTGCCGATCAGCCAAACGTCTCTTCAGGCCACTGACTAGCGATAA 37264 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60927437 GCCGACCAGAACACCTTGCCGATCAGCCAAACGTCTCTTCAGGCCACTGACTAGCGATAA 60927496 Query 37265 CTTTCCCCACAACGGAACAACTCTCATTGCATGGGATCATTGGGTACTGTGGGTTTAGTG 37324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60927497 CTTTCCCCACAACGGAACAACTCTCATTGCATGGGATCATTGGGTACTGTGGGTTTAGTG 60927556 Query 37325 GTTGTAAAAACACCTGACCGCTATCCCTGATCAGTTTCTTGAAGGTAAACTCATCACCCC 37384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60927557 GTTGTAAAAACACCTGACCGCTATCCCTGATCAGTTTCTTGAAGGTAAACTCATCACCCC 60927616 Query 37385 CAAGTCTGGCTATGCAGAAATCACCTGGCTCAACAGCCTGCTCAGGGTCAACGAGAATTA 37444 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60927617 CAAGTCTGGCTATGCAGAAATCACCTGGCTCAACAGCCTGCTCAGGGTCAACGAGAATTA 60927676 Query 37445 ACATTCCGTCAGGAAAGCT 37463 ||||||||||||||||||| Sbjct 60927677 ACATTCCGTCAGGAAAGCT 60927695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155082895752512