Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq11 156 5e-33 seq1 134 2e-26 seq3 100 3e-16 seq2 87.8 2e-12 >seq11 Length=62681010 Score = 156 bits (172), Expect = 5e-33 Identities = 387/585 (66%), Gaps = 2/585 (0%) Strand=Plus/Minus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| ||| || |||||||||||||| ||||| || |||| ||||| ||||| || | Sbjct 8942328 ACAGCAAGCAAGCGAAATCGCAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGA 8942269 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 24245 | || | ||||||||||| || | |||||| | ||||||||||| | || || ||| Sbjct 8942268 AAGTTAATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGG-CACAGAAACTTCCG 8942210 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG 24305 || || || || |||||||| ||||| || || | | ||| | || | | | Sbjct 8942209 GAGAAAAAGATCCCTTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCG 8942150 Query 24306 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 24365 | | ||||| || |||||| ||||| || || ||||| |||| ||||| || Sbjct 8942149 CCGTCGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATG 8942090 Query 24366 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 24425 || || ||| ||| ||||||| |||||| | || || || | | ||||| Sbjct 8942089 GCGCGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTG 8942030 Query 24426 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 24485 ||||| || || || || ||||| || || ||||| || || || ||| | |||||| Sbjct 8942029 TACATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCACGCGCCTCG 8941970 Query 24486 GTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 24545 | ||||| || ||| | || || | || | || ||| ||||| || || | Sbjct 8941969 GAGATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAG 8941910 Query 24546 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 24605 || || ||||| || | || || | || || | | || || | || || | | | Sbjct 8941909 GCGGCGAAAAAGGCGAGAACGTGACTAATGAAGTGGTGCTCATCGGCGGTGAGAGTTTCC 8941850 Query 24606 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 24665 || | | | ||| ||| | ||| ||||| || | |||||||| || || || || Sbjct 8941849 CAGTGACGAAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCT 8941790 Query 24666 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 24710 || || ||||| | ||| | || | ||||| || ||||| ||| Sbjct 8941789 TTCTTGTACATTTCCCATACTTCTGGGTATTGGATCGGAAACATA 8941745 >seq1 Length=55868233 Score = 134 bits (148), Expect = 2e-26 Identities = 385/586 (66%), Gaps = 6/586 (1%) Strand=Plus/Minus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| ||| || || || ||||| || ||||| || |||| | || || | ||| || | Sbjct 54862753 ACAGCAAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTTGTTTGAGA 54862694 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG-ACGCAAA-TGATCC 24244 | || ||| ||||||| || |||||||| | ||||||||| | || ||| || || Sbjct 54862693 AAGTTTATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCACAGAAACTG--CC 54862636 Query 24245 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCT 24304 || || || || |||||||| || || || || | | ||| || || | ||| Sbjct 54862635 GGAGAAAAATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCC 54862576 Query 24305 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTAT 24364 | | | ||||| || |||||||||||| || || || || |||| || || | Sbjct 54862575 GCCGTCGATCCATTTCAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGT 54862516 Query 24365 AGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACT 24424 ||| | ||||| ||| ||||| | |||||||| ||| || || | | ||||| Sbjct 54862515 AGCGTGGAAGAGGCGGTTCTTTTCGGTGGAATCTTTAATATAAGTTTCGAGGAGGAGACT 54862456 Query 24425 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 24484 |||||| || || || || || || ||||| ||||| ||||| || || | ||||| Sbjct 54862455 ATACATCTCAGAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAATGCACGCGCCTC 54862396 Query 24485 GGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 24544 | || || || ||| | || || | || | |||||| || || || || Sbjct 54862395 CGCGATTTGGACCTCTTTCATGAAGCGAACGGCGAGATTTTCTAGGACGATGCCATCGGA 54862336 Query 24545 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTAT 24603 || || || || || | ||||| | || || | |||||| || ||| || || | Sbjct 54862335 TGCGGCGAAGAAGGCAAGGACATGACTGATGAAGTGGCGTTCGTC-GGCGTTAAGATTTT 54862277 Query 24604 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 24663 ||| | | ||| ||| | ||| ||||| || | |||||||| || || || | Sbjct 54862276 GCCAGTGTGGAAGATCGGAAGAGAGATCAACTTCCTCGGCAGTCCAAAAAGAGGCTTCGG 54862217 Query 24664 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709 | || || ||||| | ||| || | | ||||| ||||| || || Sbjct 54862216 CTTTCTTGTACATTTCCCATATCTGTGGGTATTGGATTGGGAACAT 54862171 >seq3 Length=45765648 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 |||||| ||||| || | || |||||||| || ||||||||| ||| ||| | | | Sbjct 6820279 AGTTCCAGCATTGAAAAGTGTGGGAGAAGCATGAGTAAACCATCTTTGAGACATCATGTG 6820338 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 54543 || || | ||||| || || || || | ||||||||| ||||| || | |||||| Sbjct 6820339 ATAAGTTTTTATAGCAGAATCAATGTCATTCTTATGAATTCCAACTGCAACCCTCATTAA 6820398 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 |||||| || || ||||| | | ||| | | ||||| | |||||| | || | Sbjct 6820399 CATGTGTTGGGGCCTTTCTATAACCTTCCCTTGAACTTTCAAGAGGTAGGACCTCTCAAG 6820458 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||||| ||||||||||| | || |||||| || || || || || Sbjct 6820459 GGTTTTGAAACCAAAATAATCATAGTCAAAGTCCCGATCATATATGAT 6820506 >seq2 Length=62769430 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 ||| || ||||| || | || |||||||| || || |||||| ||| ||| | | | Sbjct 29134728 AGTCCCAGCATTGAAAAGAGTGGGAGAAGCATGAGTGAACCATCTTTGAGACATCATGTG 29134669 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 54543 || || | ||||| || || || || | ||||||||| || || || | |||||| Sbjct 29134668 ATAAGTTTTTATAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCAACCCTCATTAA 29134609 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 |||||||||||| ||||| | | ||| | | ||||| | || || | |||| Sbjct 29134608 CATGTGCTGAGGCCTTTCTATAACCTTCCCTTGAACTTTCAAGAGATAAGACCTCTCCAG 29134549 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||||| || ||||| || | ||| |||||| || || || || || Sbjct 29134548 GGTTTTGAAGCCAAAGTAATCGTAGTCAAAGTCACGATCATATATGAT 29134501 Score = 82.4 bits (90), Expect = 9e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 |||||| ||||| | |||| ||| || | ||| | || | || |||||| | ||| || Sbjct 29135071 TCCTCCTTGATCAACATATCGAGCAGTATCATTGAACACCCGCAGCATTGGGACAATTCC 29135012 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 ||| |||| |||||| || || ||||| || || |||| |||||||| || || Sbjct 29135011 ATTAGATGTACCATTTGTTCCACGAATATAACTACCTGTGGCTCGAATATTGTGAACAGA 29134952 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || || || || ||| ||| | || || || || || ||||| || Sbjct 29134951 AACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATATAT 29134892 Query 54364 GCCCTCTATACTATCATCCATCATG 54388 || || ||||||||||| ||||| Sbjct 29134891 TCCTTCAATACTATCATCTTTCATG 29134867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593713926148320