Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_002167.1 Length=39732 Score E Sequences producing significant alignments: (Bits) Value seq2 398 2e-106 >seq2 Length=62769430 Score = 398 bits (440), Expect = 2e-106 Identities = 228/233 (98%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 28243 CCAAACGTCTCTTCAGGCCACTGGCTGGCGATAACTTTCCCCACAACGGAACAACTCTCA 28302 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 60927463 CCAAACGTCTCTTCAGGCCACTGACTAGCGATAACTTTCCCCACAACGGAACAACTCTCA 60927522 Query 28303 TTGCATGGGATCATTGGGTACTGTGGGTTTAGTGGTTGTAAAAACACCTGACCGCTATCC 28362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60927523 TTGCATGGGATCATTGGGTACTGTGGGTTTAGTGGTTGTAAAAACACCTGACCGCTATCC 60927582 Query 28363 CTGATCAGTTTCTTGAAGGTAAACTCATCACCCCCAAGTCTGGCTATGCAGAAATCACCT 28422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60927583 CTGATCAGTTTCTTGAAGGTAAACTCATCACCCCCAAGTCTGGCTATGCAGAAATCACCT 60927642 Query 28423 GGCTCAACAGCCTGCTCAGGGTCAACCAGAATTAACATCCCGTCAGGAAAACT 28475 |||||||||||||||||||||||||| ||||||||||| ||||||||||| || Sbjct 60927643 GGCTCAACAGCCTGCTCAGGGTCAACGAGAATTAACATTCCGTCAGGAAAGCT 60927695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127019240343352