Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq2 116 6e-21 seq511 104 3e-17 seq12 100 4e-16 seq9 98.7 1e-15 seq11 87.8 3e-12 seq10 86.0 9e-12 >seq2 Length=62769430 Score = 116 bits (128), Expect = 6e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | |||||||| | |||||| || || ||||||||||| | | Sbjct 27609686 CCACCCCGAAGGCGGAGAACCAAATGGAGAGTAGACTCCTTCTGGATATTATAATCGGCA 27609627 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | ||| || | ||||||||||||||||||||||||||| || || || || Sbjct 27609626 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGG 27609567 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||| || || Sbjct 27609566 ATTCCTTCTTTGTCCTG 27609550 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | ||| | || |||||||| | ||||| || ||| || || ||||| |||| Sbjct 10572116 CCACCACGAAGACGCAACACCAAATGGAGGGTAGACTCCTTTTGA-ATGTTATAGTCTGC 10572058 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||| ||||||| ||| || | ||||| ||||||||||| || || ||||| || || || Sbjct 10572057 AAGGGTTCTGCCATCTTCAAGCTGTTTCCCAGCAAAAATTAACCTCTGCTGGTCTGGTGG 10571998 Query 146170 AATTCCTTCTTTATCTTG 146187 || || || || || || Sbjct 10571997 GATGCCCTCCTTGTCCTG 10571980 >seq511 Length=6087 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| |||||||| ||||| || | || | ||| || || || || |||||||| Sbjct 5760 GTTCCTCCTCTAAGCCTTAAAACTAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCA 5701 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | || |||| || ||| |||| ||| || |||||||||||||| || |||||||| ||| Sbjct 5700 GCTAGGGTTCGGCCATCTTCTAGTTGCTTACCAGCAAAAATCAACCTCTGCTGATCAGGA 5641 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || || |||||||| || Sbjct 5640 GGGATGCCCTCTTTATCCTG 5621 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || ||||| ||||| || | || | ||| || || || || |||||||| Sbjct 484 GTTCCTCCCCTAAGCCTTAACACTAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCA 425 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | || |||| || ||| || | ||| || |||||||||||||| || |||||||| ||| Sbjct 424 GCTAGGGTTCGGCCATCTTCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGATCAGGA 365 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||||||||| || Sbjct 364 GGGATGCCTTCTTTATCCTG 345 >seq12 Length=35429946 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || ||||| ||||| || | || | ||| || || || || |||||||| Sbjct 4807173 GTTCCTCCCCTAAGCCTTAACACTAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCA 4807232 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | || |||| || ||| |||| ||| || |||||||||||||| || |||||||| ||| Sbjct 4807233 GCTAGGGTTCGGCCATCTTCTAGTTGCTTACCAGCAAAAATCAACCTCTGCTGATCAGGA 4807292 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || || |||||||| || Sbjct 4807293 GGGATGCCCTCTTTATCCTG 4807312 >seq9 Length=70713020 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||| ||||| | ||||| || | ||||| ||||| ||||||||||||| | Sbjct 66881583 CCTCCTCGAAGTCGGAGCACCAAGTGGAGGGTAGACTCTTTCTGGATATTATAATCTGCA 66881642 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || || | ||| || | ||||| |||||||||||||| || |||||||| || ||| Sbjct 66881643 AGTGTCCTACCATCTTCGAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGATCTGGTGGA 66881702 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || || || Sbjct 66881703 ATCCCTTCCTTGTCCTG 66881719 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | || | ||| |||||||| | || ||||| || || ||||| || | | Sbjct 66881811 CCACCACGGAGACGTAACACCAAATGGAGGGTCGATTCCTTCTGAATGTTATAGTCCGCA 66881870 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||||| || ||| || | || ||||||||||||||||| || ||||| ||||| || Sbjct 66881871 AGAGTTCGGCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCCGGTGGG 66881930 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| ||||| || Sbjct 66881931 ATCCCTTCCTTATCCTG 66881947 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||| ||||| ||| |||||||| | || ||||| || || ||||| |||| | Sbjct 66881355 CCTCCTCGAAGTCGTAAAACCAAATGCAGGGTCGATTCCTTTTGGATGTTATAGTCTGCA 66881414 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || || | ||| || | || ||||| ||||||||||| || ||||| || |||||| Sbjct 66881415 AGTGTCCTCCCATCCTCAAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGAGGA 66881474 Query 146171 ATTCCTTCTTTATCTTG 146187 || || || || || || Sbjct 66881475 ATCCCCTCCTTGTCCTG 66881491 Score = 89.7 bits (98), Expect = 8e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 146081 GTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCA 146140 ||||| ||||| || || ||||||| ||| || || | ||| || | ||||||||| Sbjct 66882069 GTAGACTCTTTCTGGATGTTGTAATCTGCAAGTGTCCTACCATCTTCGAGTTGTTTTCCG 66882128 Query 146141 GCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||||||||| || |||||||| || ||||| ||||| || ||||| Sbjct 66882129 GCAAAAATCAACCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTG 66882175 Score = 89.7 bits (98), Expect = 8e-13 Identities = 151/227 (67%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||||||| | || |||||||| | ||| ||||| || || ||||| || | | Sbjct 66887737 CCTCCTCTAAGGCGCAAAACCAAATGCAGAGTGGATTCCTTTTGGATGTTATAGTCCGCA 66887796 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || || | ||| || | || ||||| ||||||||||| || ||||| || |||||| Sbjct 66887797 AGCGTCCTCCCATCCTCAAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGAGGA 66887856 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || || || || || || || || || || || || Sbjct 66887857 ATCCCCTCCTTGTCCTGAATTTTCGCTTTAACATTGTCAATGGTGTCCGAGCTCTCGACC 66887916 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || ||||| || |||||||| || || || |||| |||||| ||||| Sbjct 66887917 TCCAGTGTTATGGTTTTACCAGTCAAGGTCTTAACGAATATCTGCAT 66887963 >seq11 Length=62681010 Score = 87.8 bits (96), Expect = 3e-12 Identities = 80/100 (80%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 146088 CTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAA 146147 |||| || ||||| ||||| | | ||| || | ||| || | ||||| |||||||||| Sbjct 1163263 CTTTTGA-ATATTGTAATCAGCCAAAGTCCTTCCATCTTCCAGCTGTTTCCCAGCAAAAA 1163321 Query 146148 TCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||| ||||||||||| || |||||||||||||| || || Sbjct 1163322 TCAACCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCCTG 1163361 >seq10 Length=62175169 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | || || | || | ||| ||||| || ||||| ||||| | Sbjct 51861359 CCACCACGAAGACGCAAGACAAGGTGGAGAGTGGATTCCTTCTGAATATTGTAATCAGCC 51861300 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| || | ||| || || ||||| ||||| |||||||| ||||||||||| || ||| Sbjct 51861299 AAAGTCCTTCCATCTTCCAACTGTTTCCCAGCGAAAATCAACCTTTGCTGATCTGGTGGA 51861240 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| || || Sbjct 51861239 ATCCCTTCTTTGTCCTG 51861223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743516789921280