Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20]
1,034 sequences; 761,565,430 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq11 109 5e-19
>seq11
Length=62681010
Score = 109 bits (120), Expect = 5e-19
Identities = 378/583 (65%), Gaps = 15/583 (3%)
Strand=Plus/Minus
Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294
||||| ||||| || || | ||||| || | |||||||||||||| || || |
Sbjct 8942320 CAAGCGAAATCGCAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTTAAT 8942261
Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAA---CCAGAAAAG 16351
|| ||||||| || | ||||| | ||||||||| |||| | || || || ||
Sbjct 8942260 CCGGGCATTAACCCCCTCTTTTTTAACCAAAATAT---GGCACAGAAACTTCCGGAGAAA 8942204
Query 16352 AATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactt 16411
|| || ||||| || ||||| || | || || || || | ||| | | |
Sbjct 8942203 AAGATCCCTTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTT---TCTCCGCCG 8942147
Query 16412 tctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCA 16471
|| |||||||| ||||||| | ||||||| ||||| || |||| || ||
Sbjct 8942146 TCGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 8942087
Query 16472 TTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATAC 16531
|| | | || ||||| | | |||| || ||||| || | || | ||| |||
Sbjct 8942086 CGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTAC 8942027
Query 16532 ATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCAT-AAAAGCATCTAGCTTCGGA 16590
|| || || || ||||| || || || || || ||||||| ||||||| | || |||||
Sbjct 8942026 ATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCA-CGCGCCTCGGA 8941968
Query 16591 TATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGC 16650
|| || || || |||| | || | ||| || ||||| |||||| ||
Sbjct 8941967 GATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGC 8941908
Query 16651 TGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC--TGAAAGTTTTAAC 16708
|| ||||| || || | ||| |||| || | | || | | ||| ||||| |
Sbjct 8941907 GGCGAAAAAGGCGAGAACGTGACTAATGAAGTGGTGCTCATCGGCGGTGAGAGTTT--CC 8941850
Query 16709 CAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCC 16768
|||| | || ||| || | |||||| || ||| | |||||||| || || | ||
Sbjct 8941849 CAGTGACGAAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCT 8941790
Query 16769 TTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811
|| || ||||||| ||||| ||| ||| || |||||||
Sbjct 8941789 TTCTTGTACATTTCCCATACTTCTGGGTATTGGATCGGAAACA 8941747
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462506022032400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |