Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq11 109 5e-19 >seq11 Length=62681010 Score = 109 bits (120), Expect = 5e-19 Identities = 378/583 (65%), Gaps = 15/583 (3%) Strand=Plus/Minus Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 ||||| ||||| || || | ||||| || | |||||||||||||| || || | Sbjct 8942320 CAAGCGAAATCGCAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTTAAT 8942261 Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAA---CCAGAAAAG 16351 || ||||||| || | ||||| | ||||||||| |||| | || || || || Sbjct 8942260 CCGGGCATTAACCCCCTCTTTTTTAACCAAAATAT---GGCACAGAAACTTCCGGAGAAA 8942204 Query 16352 AATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactt 16411 || || ||||| || ||||| || | || || || || | ||| | | | Sbjct 8942203 AAGATCCCTTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTT---TCTCCGCCG 8942147 Query 16412 tctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCA 16471 || |||||||| ||||||| | ||||||| ||||| || |||| || || Sbjct 8942146 TCGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 8942087 Query 16472 TTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATAC 16531 || | | || ||||| | | |||| || ||||| || | || | ||| ||| Sbjct 8942086 CGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTAC 8942027 Query 16532 ATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCAT-AAAAGCATCTAGCTTCGGA 16590 || || || || ||||| || || || || || ||||||| ||||||| | || ||||| Sbjct 8942026 ATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCA-CGCGCCTCGGA 8941968 Query 16591 TATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGC 16650 || || || || |||| | || | ||| || ||||| |||||| || Sbjct 8941967 GATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGC 8941908 Query 16651 TGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC--TGAAAGTTTTAAC 16708 || ||||| || || | ||| |||| || | | || | | ||| ||||| | Sbjct 8941907 GGCGAAAAAGGCGAGAACGTGACTAATGAAGTGGTGCTCATCGGCGGTGAGAGTTT--CC 8941850 Query 16709 CAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCC 16768 |||| | || ||| || | |||||| || ||| | |||||||| || || | || Sbjct 8941849 CAGTGACGAAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCT 8941790 Query 16769 TTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811 || || ||||||| ||||| ||| ||| || ||||||| Sbjct 8941789 TTCTTGTACATTTCCCATACTTCTGGGTATTGGATCGGAAACA 8941747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462506022032400