Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq2 100 2e-16 seq7 96.9 3e-15 seq13 91.5 1e-13 >seq2 Length=62769430 Score = 100 bits (110), Expect = 2e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || || |||||||| ||| | || || || || ||||||||||| || || ||||||||| Sbjct 334635 CAGTTCTACGTTGCCAATGAGGAGTTATCTTGCCAAATGTATCAGCGTTCTGCTGATATG 334694 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || ||||||| || || || |||||| |||||| || || || | |||||||| ||| Sbjct 334695 GGCTTGGGTGTGCCATTTAACATTGCATCTTATGCTCTCCTGACATGCATGATTGCTCAT 334754 Query 20551 GTT 20553 ||| Sbjct 334755 GTT 334757 >seq7 Length=60982465 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || || || ||||| ||| | || || || || ||||||||||| || || ||||||||| Sbjct 47413485 CAGTTCTATGTTGCCAATGAGGAGTTATCTTGCCAAATGTATCAGCGTTCTGCTGATATG 47413544 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || ||||||| || || || |||||| |||||| || || || | |||||||| ||| Sbjct 47413545 GGCTTGGGTGTGCCATTTAACATTGCATCTTATGCTCTTCTGACATGCATGATTGCTCAT 47413604 Query 20551 GTT 20553 ||| Sbjct 47413605 GTT 47413607 >seq13 Length=58321163 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || || || ||||| ||| | || || || || ||||||||||| || || ||||||||| Sbjct 55501735 CAGTTCTATGTTGCCAATGAGGAGTTATCTTGCCAAATGTATCAGCGTTCTGCTGATATG 55501794 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || ||||||| || || || |||||| |||||| || || || | |||||| | ||| Sbjct 55501795 GGCTTGGGTGTGCCATTTAACATTGCATCTTATGCTCTCCTGACATGCATGATTACTCAT 55501854 Query 20551 GTT 20553 ||| Sbjct 55501855 GTT 55501857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399178969533130