Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq11 140 3e-28 seq1 111 2e-19 >seq11 Length=62681010 Score = 140 bits (154), Expect = 3e-28 Identities = 371/562 (66%), Gaps = 5/562 (1%) Strand=Plus/Minus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 || || || ||||| || || || || ||||||| || | |||||||| || ||| Sbjct 8942323 AAGCAAGCGAAATCGCAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTT 8942264 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 ||||| ||||| || || | ||||||||||||||||| ||| ||| |||||| || Sbjct 8942263 AATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAA 8942204 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14380 || || || || || |||||| || ||||| ||||| | || | | || | || Sbjct 8942203 AAGATCCCTTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCG-TC 8942145 Query 14381 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14440 | |||||||| ||||||| || | |||||| | | | || || || || || Sbjct 8942144 G--ATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 8942087 Query 14441 TTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14500 || | | | | ||| || | | | | ||||| || || | ||| | || ||| Sbjct 8942086 CGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTAC 8942027 Query 14501 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14560 || || ||||| || ||||| ||||| || || |||||||||||| | || || || Sbjct 8942026 ATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCACGCGCCTCGGAG 8941967 Query 14561 CATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCT 14620 || |||||| || | | || | || ||| ||||| ||||| || Sbjct 8941966 ATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGCG 8941907 Query 14621 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAA 14680 || ||||| || | | || |||| |||| ||||| || | |||| ||| ||| Sbjct 8941906 GCGAAAAAGGCGAGAACGTGACTAATGAAGTGGTGCTCATCGGCGGTGAGAGTTTCCCAG 8941847 Query 14681 TCGGCTAA-ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTT 14739 | | | || ||| ||| ||||| ||||| || | |||||||| || | ||||| Sbjct 8941846 T-GACGAAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTT 8941788 Query 14740 TTTATACATTACCCATATTTCT 14761 || |||||| |||||| |||| Sbjct 8941787 CTTGTACATTTCCCATACTTCT 8941766 >seq1 Length=55868233 Score = 111 bits (122), Expect = 2e-19 Identities = 360/557 (65%), Gaps = 3/557 (1%) Strand=Plus/Minus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 || || ||||| || ||||| || || ||||||| | || | | |||||| || ||| Sbjct 54862748 AAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTTGTTTGAGAAAGTT 54862689 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 |||| ||||| || || || ||||||||||||||||| ||| ||| ||||| || Sbjct 54862688 TATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCACAGAAACTGCCGGAGAAA 54862629 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14380 ||||| || || || ||| || || ||||| ||||| |||| | | | | || Sbjct 54862628 AATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCCGCCG-TC 54862570 Query 14381 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14440 | |||||||| |||||| || | |||||| | | || |||||| |||| Sbjct 54862569 G--ATCCATTTCAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAGCG 54862512 Query 14441 TTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14500 | || | | | ||| || | | | | ||| || || || | || | |||||| Sbjct 54862511 TGGAAGAGGCGGTTCTTTTCGGTGGAATCTTTAATATAAGTTTCGAGGAGGAGACTATAC 54862452 Query 14501 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14560 || |||||||| || || || || || || || || |||||||| | || || | Sbjct 54862451 ATCTCAGAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAATGCACGCGCCTCCGCG 54862392 Query 14561 CATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCT 14620 ||| |||||| || | |||| | |||||| || || ||||| || Sbjct 54862391 ATTTGGACCTCTTTCATGAAGCGAACGGCGAGATTTTCTAGGACGATGCCATCGGATGCG 54862332 Query 14621 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAA 14680 || || || || | | | | || |||| | || || | | || |||| ||| Sbjct 54862331 GCGAAGAAGGCAAGGACATGACTGATGAAGTGGCGTTCGTCGGCGTTAAGATTTTGCCAG 54862272 Query 14681 TCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTT 14740 | | | ||| ||| ||||| ||||| || | ||||||||| || | ||||| Sbjct 54862271 TGTGGAAGATCGGAAGAGAGATCAACTTCCTCGGCAGTCCAAAAAGAGGCTTCGGCTTTC 54862212 Query 14741 TTATACATTACCCATAT 14757 || |||||| ||||||| Sbjct 54862211 TTGTACATTTCCCATAT 54862195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482339365683120