Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq6 113 3e-20 seq2 104 2e-17 seq13 82.4 6e-11 >seq6 Length=51074515 Score = 113 bits (124), Expect = 3e-20 Identities = 167/236 (71%), Gaps = 18/236 (8%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | |||||| || || ||||| |||||||| || || ||| Sbjct 42745656 CCACCACGGAGACGAAGAACAAGGTGAAGGGTAGACTCTTTCTGAATGTTATAATCAGCC 42745597 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | |||||||||||||||||| ||| |||| || ||||| ||||| || Sbjct 42745596 AAAGTCCTCCCATCTTCCAATTGTTTGCCGGCAAAGATGAGCCTTTGCTGATCAGGTGGG 42745537 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGG-- 18276 | ||||||||||| ||| | |||| | |||| ||||| || |||| Sbjct 42745536 ATTCCTTCCTTATCCTGAATCT-TTGCCT--------TAACATTGTCAATGGTATCGGAG 42745486 Query 18277 -TTTCA------ATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| | |||||| ||||||||||||| || || |||||||| ||||| Sbjct 42745485 CTTTCAACCTCCAAGGTGATTGTTTTGCCGGTCAAAGTCTTGACAAAAATCTGCAT 42745430 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || || | || | |||||| || ||||| ||||| || || || || ||| Sbjct 42745428 CCTCCACGAAGCCTCAAAACAAGGTGAAGGGTGGATTCCTTTTGGATATTATAATCAGCC 42745369 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | |||||||||||||||||| || |||| | | ||||| || || Sbjct 42745368 AAGGTCCTCCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGCTGTTGGTCAGGTGGG 42745309 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||| || ||| | ||| || | | | ||||| |||| | Sbjct 42745308 ATGCCTTCCTTGTCTTGAATCTTGGCCTTAACGTTGTCGATGGTGTCGGAACTCTCGACT 42745249 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | |||||||| || ||||| ||||| |||||||| Sbjct 42745248 TCGAGGGTGATGGTCTTGCCGGTTAAGGTTTTGACAAAGATTTGCAT 42745202 >seq2 Length=62769430 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || |||| ||| |||| |||||| || |||||||| ||||||||||||||||| Sbjct 27609230 CCGCCACGAAGTCGAAGAACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGGCT 27609171 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| || | ||||||||| ||| | ||||| || || |||||| || Sbjct 27609170 AGCGTGCGGCCATCCTCAAGTTGTTTGCCAGCAAATATAAGCCTCTGCTGATCCGGTGGG 27609111 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| || | ||| || | ||| ||||| ||| Sbjct 27609110 ATCCCTTCCTTATCTTGGATCTTAGCCTTCACATTATCAATGGTGTCTGAACTCTCCACC 27609051 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | ||||| || | ||||| ||||| |||||||| Sbjct 27609050 TCGAGGGTGATGGTCTTGCCAGTGAGGGTTTTAACAAAGATTTGCAT 27609004 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || | ||| || | ||| || || || |||||||||||||||||||| || Sbjct 10571660 CCACCCCTGAGACGAAGCACAAGGTGGAGGGTAGACTCTTTTTGAATGTTGTAGTCAGCA 10571601 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| | ||| || || ||| ||||||| || ||||| || ||| Sbjct 10571600 AGGGTGCGACCATCTTCAAGTTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCAGGGGGG 10571541 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| ||||| || | |||||| | ||| |||||| | || Sbjct 10571540 ATCCCTTCTTTATCCTGGATCTTAGCCTTGACATTATCAATTGTGTCAGAGCTTTCAACC 10571481 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||||| | ||||| || | |||||||| || || ||||| Sbjct 10571480 TCAAGGGTGATTGTCTTGCCAGTAAGGGTTTTTACGAAGATCTGCAT 10571434 >seq13 Length=58321163 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || || | ||| |||| ||| ||||| || || || || |||||||| || || Sbjct 44437405 TCCTCCACGGAGGCGAAGCACCAAGTGGAGTGTGGACTCCTTCTGGATGTTGTAATCAGC 44437464 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || ||| | ||| || | ||| || || || |||| || ||||| || || ||| Sbjct 44437465 CAATGTGCGGCCATCCTCAAGTTGCTTACCAGCGAAGATCAGCCTTTGCTGGTCTGGGGG 44437524 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||| || ||| | |||||| | ||| || ||| ||| Sbjct 44437525 GATGCCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTATCAGAACTCTCCAC 44437584 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | || ||||| | || || |||||||||||||| Sbjct 44437585 CTCCAATGTGATGGTCTTTCCGGTGAGGGTCTTGACAAAAATTTGCAT 44437632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379339219554330