Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq6 96.9 3e-15 seq9 84.2 2e-11 >seq6 Length=51074515 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| ||||| || || || ||||||||||| || ||| | || || ||| | Sbjct 42745430 ATGCAGATTTTTGTCAAGACTTTGACCGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 42745489 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | || | |||||||| ||| ||| | || ||||| | || ||| ||| Sbjct 42745490 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 42745549 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||| | | || | ||| ||||||||| |||||||| | |||| || ||||| | | Sbjct 42745550 CAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 42745609 Query 25012 ATACAGAAAGAGGCCACGCTTCA 25034 || ||||||||| | || ||||| Sbjct 42745610 ATTCAGAAAGAGTCTACCCTTCA 42745632 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 |||||| || ||||| ||||||||||||||||| || || ||| |||| ||||| ||| Sbjct 42745201 CATGCAAATCTTTGTCAAAACCTTAACCGGCAAGACCATCACCCTCGAAGTCGA---GAG 42745257 Query 24891 ---CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGA 24947 ||||| | || | ||||||| || ||| | || |||||| | || ||| Sbjct 42745258 TTCCGACACCATCGACAACGTTAAGGCCAAGATTCAAGACAAGGAAGGCATCCCACCTGA 42745317 Query 24948 CCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTA 25007 ||| || ||||| || | || ||||||||| |||||||| | ||| || ||||| Sbjct 42745318 CCAACAGCGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGGAGGACCTTGGCTGATTA 42745377 Query 25008 CAGCATACAGAAAGAGGCCACGCTTCA 25034 | || || || || |||| ||||| Sbjct 42745378 TAATATCCAAAAGGAATCCACCCTTCA 42745404 >seq9 Length=70713020 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG- 24890 |||||||| || || ||||||||||||||||| || || ||| |||| ||||| ||| Sbjct 65273182 ATGCAGATCTTCGTCAAAACCTTAACCGGCAAGACCATCACCCTCGAAGTCGA---GAGC 65273238 Query 24891 --CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 ||||| | || | ||| ||| |||||| | || |||||| | || ||| Sbjct 65273239 TCCGACACCATCGATAATGTGAAGTCTAAAATTCAAGACAAGGAAGGCATCCCACCAGAC 65273298 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008 ||||| ||| | || | || || ||||| || || || | || || ||||||| Sbjct 65273299 CAGCAGCGTCTTATCTTCGCCGGAAAACAGCTCGAGGACGGCCGTACCTTGGCCGATTAC 65273358 Query 25009 AGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 | ||| ||||| || |||| || || | || ||||| | || || ||| Sbjct 65273359 AACATCCAGAAGGAATCCACCCTCCACCTTGTCTTACGTCTTCGTGGGGGT 65273409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418298728585280