Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 8e-14 >seq2 Length=62769430 Score = 93.3 bits (102), Expect = 8e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 94183 GCGATAGAAGCCAAATTGCACACTGCAGTTTCCTCCGAATCACTGTACTGGACAATTTCA 94242 || ||||| |||| ||||||||| || |||||| | | |||||| | || ||| Sbjct 29135928 GCAATAGATGCCAGATTGCACACAGCTGTTTCCATTGGACTTGTGTACTCAATTATCTCA 29135869 Query 94243 GTGCACAAATTTGAAGACTTGATGATGCCGACATTTTCTTGGTTAGACTTTCTATTGATG 94302 || |||||||||||||| || ||| |||| | ||||| |||||| ||||||||| | Sbjct 29135868 GTACACAAATTTGAAGATTTAATGGTGCCAAGATTTTGCTGGTTACTTTTTCTATTGCAG 29135809 Query 94303 GTATCCTTAAA 94313 ||||||| ||| Sbjct 29135808 GTATCCTGAAA 29135798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989570889867470