Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq11 113 4e-20 seq1 107 2e-18 >seq11 Length=62681010 Score = 113 bits (124), Expect = 4e-20 Identities = 365/562 (65%), Gaps = 5/562 (1%) Strand=Plus/Minus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || || || ||||| || || || || ||||||| || | |||||||| || ||| Sbjct 8942323 AAGCAAGCGAAATCGCAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTT 8942264 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAG 13988 ||||| ||||| || || | ||||||||||||||||| ||| || ||||| || Sbjct 8942263 AATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAA 8942204 Query 13989 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14048 || || || || || |||||| || ||||| ||||| | || | | || | || Sbjct 8942203 AAGATCCCTTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCG-TC 8942145 Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108 | |||||||| ||||||| || | |||||| | | | || || || || || Sbjct 8942144 G--ATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 8942087 Query 14109 TTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14168 || | | | ||| || | | | | ||||| || || | ||| | || ||| Sbjct 8942086 CGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTAC 8942027 Query 14169 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCAT-AAAAGCATCTAGCTTCCGA 14227 || || ||||| || ||||| ||||| || || ||||||| ||||||| | || || || Sbjct 8942026 ATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCA-CGCGCCTCGGA 8941968 Query 14228 CCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14287 || || || || | | || | || ||| ||||| ||||| || Sbjct 8941967 GATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGC 8941908 Query 14288 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCA 14347 || ||||| || | | || |||| |||| ||||| || | |||| ||| ||| Sbjct 8941907 GGCGAAAAAGGCGAGAACGTGACTAATGAAGTGGTGCTCATCGGCGGTGAGAGTTTCCCA 8941848 Query 14348 ATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTT 14407 | | ||| ||| ||||| ||||| || | |||||||| || | ||||| Sbjct 8941847 GTGACGAAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTT 8941788 Query 14408 TTTATACATTACCCATATTTCT 14429 || |||||| |||||| |||| Sbjct 8941787 CTTGTACATTTCCCATACTTCT 8941766 >seq1 Length=55868233 Score = 107 bits (118), Expect = 2e-18 Identities = 364/560 (65%), Gaps = 9/560 (2%) Strand=Plus/Minus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || || ||||| || ||||| || || ||||||| | || | | |||||| || ||| Sbjct 54862748 AAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTTGTTTGAGAAAGTT 54862689 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTG--CAGCAAATGACCCGGAAA 13986 |||| ||||| || || || ||||||||||||||||| | ||| || || ||||| | Sbjct 54862688 TATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCACAGAAACTG--CCGGAGA 54862631 Query 13987 AGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT 14046 | ||||| || || || ||| || || ||||| ||||| |||| | | | | Sbjct 54862630 AAAATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCCGCCG- 54862572 Query 14047 TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAG 14106 ||| |||||||| |||||| || | |||||| | | || |||||| ||| Sbjct 54862571 TCG--ATCCATTTCAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAG 54862514 Query 14107 CATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14166 | | || | | ||| || | | | | ||| || || || | || | |||| Sbjct 54862513 CGTGGAAGAGGCGGTTCTTTTCGGTGGAATCTTTAATATAAGTTTCGAGGAGGAGACTAT 54862454 Query 14167 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAA-GCATCTAGCTTCC 14225 |||| |||||||| || || || || || || || || |||||||| ||| | || ||| Sbjct 54862453 ACATCTCAGAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAATGCA-CGCGCCTCC 54862395 Query 14226 GACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14285 | ||| || || || | |||| | |||||| || || ||||| Sbjct 54862394 GCGATTTGGACCTCTTTCATGAAGCGAACGGCGAGATTTTCTAGGACGATGCCATCGGAT 54862335 Query 14286 GCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTC 14345 || || || || || | | | | || |||| | || || ||| || |||| | Sbjct 54862334 GCGGCGAAGAAGGCAAGGACATGACTGATGAAGTGGCGTTCGTCGGCGTTAAGATTTTGC 54862275 Query 14346 CAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCT 14405 || | | | ||| ||| ||||| ||||| || | ||||||||| || | ||| Sbjct 54862274 CAGTGTGGAAGATCGGAAGAGAGATCAACTTCCTCGGCAGTCCAAAAAGAGGCTTCGGCT 54862215 Query 14406 TTTTTATACATTACCCATAT 14425 || || |||||| ||||||| Sbjct 54862214 TTCTTGTACATTTCCCATAT 54862195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479721799515600