Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20]
1,034 sequences; 761,565,430 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq2 100 2e-16
seq11 98.7 8e-16
seq13 93.3 4e-14
seq10 86.0 5e-12
seq9 84.2 2e-11
>seq2
Length=62769430
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898
|||| ||||||||||| || |||||||| || || | ||| ||||||||| |||
Sbjct 10572320 TGCAGAGTAGACTCCTTCTGGATATTGTAGTCAGCTAGAGTTCGACCGTCCTCCAACTGC 10572261
Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958
|| || ||| | || | |||||||||||| ||| | ||||| ||||| ||| ||
Sbjct 10572260 TTCCCAGCAAAGATCAACCTCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTGAATCTTT 10572201
Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018
|||||| | | | | ||||| | ||| ||| | |||||| || || |||||
Sbjct 10572200 GCTTTTACATTGTCAATCGTATCAGAACTCTCAACTTCCAAGGTAATAGTCTTTCCTGTG 10572141
Query 19019 AAAGTTTTGACAAAAATTTGCAT 19041
| || || ||||||||||||||
Sbjct 10572140 AGGGTCTTCACAAAAATTTGCAT 10572118
>seq11
Length=62681010
Score = 98.7 bits (108), Expect = 8e-16
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
|| ||||||||||||||||||||||| |||| || | | || ||||||||||| ||
Sbjct 1163255 GTGGACTCCTTTTGAATATTGTAATCAGCCAAAGTCCTTCCATCTTCCAGCTGTTTCCCA 1163314
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
||| |||| | || |||||||| || | || |||||||| ||| ||| |||
Sbjct 1163315 GCAAAAATCAACCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTCGCTTTC 1163374
Query 18965 ACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023
|| | | | ||||| | || |||| ||| | ||||| || ||||| || |||||
Sbjct 1163375 ACGTTATCAATCGTATC-CGAGCTCTCCACTTCTAAAGTAATCGTCTTACCGGTCAAAGT 1163433
Query 19024 TTTGACAAAAATTTGCAT 19041
||||| || || |||||
Sbjct 1163434 CTTGACGAAGATCTGCAT 1163451
>seq13
Length=58321163
Score = 93.3 bits (102), Expect = 4e-14
Identities = 147/211 (70%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| ||| | || |||||||| || ||||| || || |||| || | | |||||
Sbjct 44437195 CACCAAGTGGAGGGTGGACTCCTTCTGGATATTATAGTCAGCCAGGGTACGGCCATCCTC 44437254
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
||| || ||||| ||| |||| || ||||| || || ||| | ||||| |||||
Sbjct 44437255 CAGTTGCTTACCAGCAAAAATCAGCCTCTGTTGGTCTGGGGGGATTCCCTCCTTGTCCTG 44437314
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
|||||| || || | | | | ||||| | ||| || | |||||||| ||
Sbjct 44437315 AATTTTTGCCTTAACATTGTCAATGGTATCTGAACTCTCTACCTCCAATGTAATGGTCTT 44437374
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
|| || ||||| || |||||||||||||||
Sbjct 44437375 CCCAGTCAAAGTCTTAACAAAAATTTGCATT 44437405
>seq10
Length=62175169
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
|| || ||||| |||||||||||||| |||| || | | || |||| |||||| ||
Sbjct 51861329 GTGGATTCCTTCTGAATATTGTAATCAGCCAAAGTCCTTCCATCTTCCAACTGTTTCCCA 51861270
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
|| |||| | || |||||||| || | || |||||||| ||| ||| ||
Sbjct 51861269 GCGAAAATCAACCTTTGCTGATCTGGTGGAATCCCTTCTTTGTCCTGAATCTTCGCCTTA 51861210
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | | ||| |||||| | |||| || | || |||||||| || || || ||
Sbjct 51861209 ACATTGTCGATCGTATCGGAACTCTCCACCTCCAAAGTTATGGTTTTCCCAGTCAACGTC 51861150
Query 19025 TTGACAAAAATTTGCAT 19041
||||| ||||| |||||
Sbjct 51861149 TTGACGAAAATCTGCAT 51861133
>seq9
Length=70713020
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872
|||| || |||| | | ||||| |||| || ||||||||||| || || |||||||
Sbjct 66888191 TTCCACCACGCAGTCGCAGCACCAAATGCAGGGTTGACTCCTTTTGGATGTTATAATCCG 66888250
Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932
| | ||| | | ||||| ||||| || || ||| |||| || ||||||||||| |
Sbjct 66888251 CTAGTGTCCTCCCATCCTCGAGCTGCTTTCCGGCAAAAATCAGCCTCTGCTGATCTGGTG 66888310
Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992
| | ||||| ||||| ||| || || || | | | ||||| | ||||
Sbjct 66888311 GAATACCCTCCTTGTCCTGAATCTTGGCCTTAACATTATCAATGGTATCAGAACTCTCCA 66888370
Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| | || |||||||| || || | ||||| ||||| || |||||
Sbjct 66888371 CCTCCAAAGTGATGGTTTTTCCGGTGAGGGTTTTTACAAATATCTGCAT 66888419
Score = 82.4 bits (90), Expect = 6e-11
Identities = 141/200 (71%), Gaps = 6/200 (3%)
Strand=Plus/Minus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
|| || ||||| || || |||||||| |||| || | ||||||| |||||||| ||
Sbjct 65273606 GTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCGTCCTCGAGCTGTTTGCCG 65273547
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
|| | || || | |||||| || || | ||| || ||||| |||||| |||
Sbjct 65273546 GCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGAATTTTAGACTTT 65273487
Query 18965 ACCTGGCCGACAGTATCGCCAG-GCTC-CGT-TTCGACGGTAATGGTTTTACCTGTTAAA 19021
|| | ||| || || || |||| || ||||| ||| ||||| || || ||||||
Sbjct 65273486 ACATTATCGATGGTGTC---AGAGCTCTCGACTTCGAGGGTGATGGTCTTGCCGGTTAAA 65273430
Query 19022 GTTTTGACAAAAATTTGCAT 19041
|||||||| || || |||||
Sbjct 65273429 GTTTTGACGAAGATCTGCAT 65273410
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414567575605396
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |