Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq2 100 2e-16 seq11 98.7 8e-16 seq13 93.3 4e-14 seq10 86.0 5e-12 seq9 84.2 2e-11 >seq2 Length=62769430 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 |||| ||||||||||| || |||||||| || || | ||| ||||||||| ||| Sbjct 10572320 TGCAGAGTAGACTCCTTCTGGATATTGTAGTCAGCTAGAGTTCGACCGTCCTCCAACTGC 10572261 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| | || | |||||||||||| ||| | ||||| ||||| ||| || Sbjct 10572260 TTCCCAGCAAAGATCAACCTCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTGAATCTTT 10572201 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 |||||| | | | | ||||| | ||| ||| | |||||| || || ||||| Sbjct 10572200 GCTTTTACATTGTCAATCGTATCAGAACTCTCAACTTCCAAGGTAATAGTCTTTCCTGTG 10572141 Query 19019 AAAGTTTTGACAAAAATTTGCAT 19041 | || || |||||||||||||| Sbjct 10572140 AGGGTCTTCACAAAAATTTGCAT 10572118 >seq11 Length=62681010 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||||||||||||||||||||| |||| || | | || ||||||||||| || Sbjct 1163255 GTGGACTCCTTTTGAATATTGTAATCAGCCAAAGTCCTTCCATCTTCCAGCTGTTTCCCA 1163314 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| | || |||||||| || | || |||||||| ||| ||| ||| Sbjct 1163315 GCAAAAATCAACCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTCGCTTTC 1163374 Query 18965 ACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023 || | | | ||||| | || |||| ||| | ||||| || ||||| || ||||| Sbjct 1163375 ACGTTATCAATCGTATC-CGAGCTCTCCACTTCTAAAGTAATCGTCTTACCGGTCAAAGT 1163433 Query 19024 TTTGACAAAAATTTGCAT 19041 ||||| || || ||||| Sbjct 1163434 CTTGACGAAGATCTGCAT 1163451 >seq13 Length=58321163 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| || ||||| || || |||| || | | ||||| Sbjct 44437195 CACCAAGTGGAGGGTGGACTCCTTCTGGATATTATAGTCAGCCAGGGTACGGCCATCCTC 44437254 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||| || ||||| ||| |||| || ||||| || || ||| | ||||| ||||| Sbjct 44437255 CAGTTGCTTACCAGCAAAAATCAGCCTCTGTTGGTCTGGGGGGATTCCCTCCTTGTCCTG 44437314 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 |||||| || || | | | | ||||| | ||| || | |||||||| || Sbjct 44437315 AATTTTTGCCTTAACATTGTCAATGGTATCTGAACTCTCTACCTCCAATGTAATGGTCTT 44437374 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || ||||| || ||||||||||||||| Sbjct 44437375 CCCAGTCAAAGTCTTAACAAAAATTTGCATT 44437405 >seq10 Length=62175169 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || ||||| |||||||||||||| |||| || | | || |||| |||||| || Sbjct 51861329 GTGGATTCCTTCTGAATATTGTAATCAGCCAAAGTCCTTCCATCTTCCAACTGTTTCCCA 51861270 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || |||| | || |||||||| || | || |||||||| ||| ||| || Sbjct 51861269 GCGAAAATCAACCTTTGCTGATCTGGTGGAATCCCTTCTTTGTCCTGAATCTTCGCCTTA 51861210 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | ||| |||||| | |||| || | || |||||||| || || || || Sbjct 51861209 ACATTGTCGATCGTATCGGAACTCTCCACCTCCAAAGTTATGGTTTTCCCAGTCAACGTC 51861150 Query 19025 TTGACAAAAATTTGCAT 19041 ||||| ||||| ||||| Sbjct 51861149 TTGACGAAAATCTGCAT 51861133 >seq9 Length=70713020 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || |||| | | ||||| |||| || ||||||||||| || || ||||||| Sbjct 66888191 TTCCACCACGCAGTCGCAGCACCAAATGCAGGGTTGACTCCTTTTGGATGTTATAATCCG 66888250 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | ||| | | ||||| ||||| || || ||| |||| || ||||||||||| | Sbjct 66888251 CTAGTGTCCTCCCATCCTCGAGCTGCTTTCCGGCAAAAATCAGCCTCTGCTGATCTGGTG 66888310 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||| ||||| ||| || || || | | | ||||| | |||| Sbjct 66888311 GAATACCCTCCTTGTCCTGAATCTTGGCCTTAACATTATCAATGGTATCAGAACTCTCCA 66888370 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || |||||||| || || | ||||| ||||| || ||||| Sbjct 66888371 CCTCCAAAGTGATGGTTTTTCCGGTGAGGGTTTTTACAAATATCTGCAT 66888419 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || ||||| || || |||||||| |||| || | ||||||| |||||||| || Sbjct 65273606 GTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCGTCCTCGAGCTGTTTGCCG 65273547 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | || || | |||||| || || | ||| || ||||| |||||| ||| Sbjct 65273546 GCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGAATTTTAGACTTT 65273487 Query 18965 ACCTGGCCGACAGTATCGCCAG-GCTC-CGT-TTCGACGGTAATGGTTTTACCTGTTAAA 19021 || | ||| || || || |||| || ||||| ||| ||||| || || |||||| Sbjct 65273486 ACATTATCGATGGTGTC---AGAGCTCTCGACTTCGAGGGTGATGGTCTTGCCGGTTAAA 65273430 Query 19022 GTTTTGACAAAAATTTGCAT 19041 |||||||| || || ||||| Sbjct 65273429 GTTTTGACGAAGATCTGCAT 65273410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414567575605396