Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq11 82.4 5e-11 >seq11 Length=62681010 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||| ||| | ||||| || || || ||||||||||| | ||| | | ||| || Sbjct 1163471 ACCAGATGAAGAGTCGATTCCTTCTGGATATTGTAATCGGCTAAAGTCCGCCCGTCCTCG 1163530 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTCG 33277 | ||||||||| || || | |||||||||||| | || |||||||| || || | Sbjct 1163531 AGTTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGG 1163590 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | || ||| || | | |||||||| | | || || ||||| ||||| Sbjct 1163591 ATTTTGGC---TTTCACGTTGTCGATCGTGTCAGAGCTCTCGACCTCGAGAGTGATCGTC 1163647 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| ||||| || || ||||| |||||||| Sbjct 1163648 TTTCCGGTAAGCGTCTTAACGAAGATTTGCAT 1163679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318773582804532