Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq3 105 5e-18 seq9 93.3 3e-14 seq11 91.5 1e-13 seq6 87.8 1e-12 seq2 82.4 5e-11 >seq3 Length=45765648 Score = 105 bits (116), Expect = 5e-18 Identities = 156/217 (72%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTC-ATCGTC 43971 |||||||| || || ||||||||||||||||||||| | || | | || ||| || Sbjct 27760466 ACCAAATGAAGAGTTGACTCTTTTTGAATATTATAATCAGT-AAGAGTCCTTCCATCCTC 27760408 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTG---AGGT---ACACCTTCTTT 44025 | ||||| ||||||||| || || | |||||||| | ||| | ||| ||||| Sbjct 27760407 AAGTTGTTCTCCTGCAAAAATTAATCTTTGCTGGTTTGGGCAAGGGGAGATACCCTCTTT 27760348 Query 44026 ATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAAT 44085 || |||||| | ||| || ||| ||| ||||| || ||| || || | ||||| Sbjct 27760347 TTCCTGAATTTTGTCTTTCACAATATCAATAGTATTTGAACTCTCAACTTCCAATGTAAT 27760288 Query 44086 TGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 |||||| || || || |||| ||||||||||| ||| Sbjct 27760287 TGTTTTTCCAGTAAAGGTCTGGACAAATATTTGGATG 27760251 >seq9 Length=70713020 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||| | || ||| |||||||| || || || ||||| || ||||| || | Sbjct 66881355 CCTCCTCGAAGTCGTAAAACCAAATGCAGGGTCGATTCCTTTTGGATGTTATAGTC-TGC 66881413 Query 43955 AATTGACG-CTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || | | |||| || | || ||||| ||||| ||||||| |||||||| |||| Sbjct 66881414 AAGTGTCCTCCCATCCTCAAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGAGG 66881473 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || || || || |||||| |||||| | ||| || || | ||| || Sbjct 66881474 AATCCCCTCCTTGTCCTGAATTTTCGCTTTGACATTGTCAATGGTGTCCGAGCTCTCGAC 66881533 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||||||||| || |||||||| ||||| ||||| Sbjct 66881534 CTCCAGGGTGATGGTTTTACCGGTCAAGGTCTTCACGAATATCTGCAT 66881581 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 |||||||||||| || || || || ||||| ||||| || | || |||| Sbjct 66881825 TAACACCAAATGGAGGGTCGATTCCTTCTGAATGTTATAGTCCGCAAGAGTTCGGCCATC 66881884 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 || | || ||||| ||||| ||||||| ||||||||| | || | ||||| ||||| Sbjct 66881885 TTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCCGGTGGGATCCCTTCCTTATC 66881944 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 ||| || || || || ||| ||||| | |||||| || | |||||| || Sbjct 66881945 CTGAATCTTGGCCTTAACATTATCAATCGTATCAGAACTCTCCACCTCCAACGTAATAGT 66882004 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| ||||| | || || ||||| || ||||| Sbjct 66882005 TTTTCCGGTGAGGGTTTTTACAAAAATCTGCAT 66882037 >seq11 Length=62681010 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 43919 TGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGT 43978 || || ||| ||| ||||||||||| ||||| || | |||| |||| ||| Sbjct 1163249 TGAAGAGTGGACTCCTTTTGAATATTGTAATCAGCCAAAGTCCTTCCATCTTCCAGCTGT 1163308 Query 43979 TTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTT 44038 || || ||||| ||||||| |||||| || | || | |||||||| || ||| || Sbjct 1163309 TTCCCAGCAAAAATCAACCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTC 1163368 Query 44039 TGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTT 44098 ||| || || ||| ||||| | |||||| || | ||||| || |||||||| Sbjct 1163369 GCTTTCACGTTATCAATCGTATCCGAGCTCTCCACTTCTAAAGTAATCGTCTTACCGGTC 1163428 Query 44099 AAAGTCTTCACAAATATTTGCAT 44121 |||||||| || || || ||||| Sbjct 1163429 AAAGTCTTGACGAAGATCTGCAT 1163451 >seq6 Length=51074515 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 |||||| ||||| |||||||| || | | |||| ||||||||||| || ||||| Sbjct 42745621 CTCTTTCTGAATGTTATAATCAGCCAAAGTCCTCCCATCTTCCAATTGTTTGCCGGCAAA 42745562 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTAT-CTGAAATTTTTTGTTTGACCA 44048 || | || |||||| || | || | ||||| |||| ||||| | |||| | | || Sbjct 42745561 GATGAGCCTTTGCTGATCAGGTGGGATTCCTTCCTTATCCTGAA--TCTTTGCCTTAACA 42745504 Query 44049 TAG-CAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTC 44107 | | ||| ||||| | || || || | || |||||||| ||||| |||||||| Sbjct 42745503 TTGTCAATGGTATCGGAGCTTTCAACCTCCAAGGTGATTGTTTTGCCGGTCAAAGTCTTG 42745444 Query 44108 ACAAATATTTGCAT 44121 ||||| || ||||| Sbjct 42745443 ACAAAAATCTGCAT 42745430 >seq2 Length=62769430 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| || || ||| || || |||||||||||| | | |||| || Sbjct 27609668 ACCAAATGGAGAGTAGACTCCTTCTGGATATTATAATCGGCAAGAGTTCTTCCATCTTCA 27609609 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | ||||||||| ||||| ||||| | ||| ||||| | || | |||||||| || | Sbjct 27609608 AGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATTCCTTCTTTGTCCTGA 27609549 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || ||| || || ||| ||||| | ||| || || | || ||||| || Sbjct 27609548 ATCTTGGCTTTCACATTATCAATGGTATCCGAACTCTCGACCTCCAAGGTGATTGTCTTT 27609489 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || | ||| || ||||| ||||||||| Sbjct 27609488 CCAGTGAGAGTTTTGACAAAGATTTGCATG 27609459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354773129137032