Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq6 105 6e-18 seq11 82.4 6e-11 seq10 82.4 6e-11 >seq6 Length=51074515 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || ||||| ||||| || ||||| ||||| ||| ||| | ||||||||||||| Sbjct 42745632 TGAAGGGTAGACTCTTTCTGAATGTTATAATCAGCCAAAGTCCTCCCATCTTCCAATTGT 42745573 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 ||||| ||| | || ||||| || ||||| || | ||||| || || ||| ||| Sbjct 42745572 TTGCCGGCAAAGATGAGCCTTTGCTGATCAGGTGGGATTCCTTCCTTATCCTGAATCTTT 42745513 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 || || | | ||| | |||| ||| |||| ||| || |||||||||||| Sbjct 42745512 GCCTTAACATTGTCAATGGTATCGGAGCTTTCAACCTCCAAGGTGATTGTTTTGCCGGTC 42745453 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 || || ||||||||||| ||||| Sbjct 42745452 AAAGTCTTGACAAAAATCTGCAT 42745430 >seq11 Length=62681010 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || || || ||||| || |||||||| ||| ||| | |||||||| ||| Sbjct 1163249 TGAAGAGTGGACTCCTTTTGAATATTGTAATCAGCCAAAGTCCTTCCATCTTCCAGCTGT 1163308 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| |||| | ||| || ||||| || | ||||||||||| ||| || Sbjct 1163309 TTCCCAGCAAAAATCAACCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTC 1163368 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 |||||| | ||| | ||| | || | ||| ||| | ||||| || || ||||| Sbjct 1163369 GCTTTCACGTTATCAATCGTATC-CGAGCTCTCCACTTCTAAAGTAATCGTCTTACCGGT 1163427 Query 20185 CAACGTTTTGACAAAAATTTGCAT 20208 ||| || ||||| || || ||||| Sbjct 1163428 CAAAGTCTTGACGAAGATCTGCAT 1163451 >seq10 Length=62175169 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || ||||| || || || |||||||| ||| ||| | ||||||||| ||| Sbjct 51861335 TGGAGAGTGGATTCCTTCTGAATATTGTAATCAGCCAAAGTCCTTCCATCTTCCAACTGT 51861276 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || || |||| | ||| || ||||| || | ||||||||||| ||| || Sbjct 51861275 TTCCCAGCGAAAATCAACCTTTGCTGATCTGGTGGAATCCCTTCTTTGTCCTGAATCTTC 51861216 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 || || | | | | | |||| | ||| |||| || |||||||| || ||| Sbjct 51861215 GCCTTAACATTGTCGATCGTATCGGAACTCTCCACCTCCAAAGTTATGGTTTTCCCAGTC 51861156 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 ||||| ||||| ||||| ||||| Sbjct 51861155 AACGTCTTGACGAAAATCTGCAT 51861133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419581912414554