Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2 105 6e-18 seq13 104 2e-17 seq9 91.5 1e-13 seq10 84.2 2e-11 seq6 82.4 6e-11 >seq2 Length=62769430 Score = 105 bits (116), Expect = 6e-18 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCT 48575 || ||||| || || |||||||||||||||||| || || || |||| || | |||| Sbjct 10550285 ACCAAATGGAGGGTCGACTCCTTTTGAATGTTGTAGTCTGC-AAGTGTC-CTGCCATCCT 10550228 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | ||||||||||| || |||| || | ||| || || || | || |||||||||| Sbjct 10550227 CAAGCTGCTTACCCGCGAAAATCAACCTCTGTTGGTCTGGAGGGATACCTTCCTTGTCCT 10550168 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||||| ||||| | | || || |||| ||| || | || ||||||| Sbjct 10550167 GGATTTTGGCCTTGACATTGTCAATAGTGTCGGAGCTCTCAACTTCCAAGGTGATGGTTT 10550108 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | ||||| ||||| ||||||||||||||||| Sbjct 10550107 TCCCGGTAAGAGTCTTCACAAAAATCTGCAT 10550077 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| ||||| || ||| |||||||| |||||||||||||| | | || || | || | Sbjct 10550058 CACCAAATGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGCGAGAGTG-CGGCCATCTT 10550000 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | || ||||||||| | | || || | ||| || || || | || ||||||||| Sbjct 10549999 CAAGTTGCTTACCGGCAAAGATCAACCTCTGTTGGTCTGGGGGAATACCCTCCTTGTCCT 10549940 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||||| | | |||||||| | | ||| ||| | || ||||| | Sbjct 10549939 GGATCTTAGCCTTGACATTGTCAATGGTATCTGAACTCTCAACCTCCAAAGTAATGGTCT 10549880 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | ||||| ||||| |||||||| || ||||| Sbjct 10549879 TTCCGGTAAGAGTCTTCACAAATATTTGCAT 10549849 >seq13 Length=58321163 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || |||||| |||||| || |||||||||||||||||| || | ||||| Sbjct 44437423 CACCAAGTGGAGTGTGGACTCCTTCTGGATGTTGTAATCAGCCAATGTGCGGCCATCCTC 44437482 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || |||||||| || | || | | ||||| || || | | |||||||||| Sbjct 44437483 AAGTTGCTTACCAGCGAAGATCAGCCTTTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTG 44437542 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| || ||||| | | || ||||| | | |||| ||| | ||| ||||| || Sbjct 44437543 AATCTTGGCCTTGACATTGTCAATCGTATCAGAACTCTCCACCTCCAATGTGATGGTCTT 44437602 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||| || || |||||||| ||||| Sbjct 44437603 TCCGGTGAGGGTCTTGACAAAAATTTGCAT 44437632 >seq9 Length=70713020 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || ||||||||||| ||||| || ||||||| ||||| || ||| || | Sbjct 65273144 TCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCGTCCTCGAGCTGTTTTCCGGCGAAG 65273085 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | ||||||||| || || | | ||||||||| |||||| ||| | | Sbjct 65273084 ATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGAATTTTAGACTTCACATTG 65273025 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | ||||| || | | ||| ||||| || ||||| || ||||| || ||||| || Sbjct 65273024 TCGATGGTGTCAGAACTCTCAACCTCGAGGGTGATGGTCTTGCCGGTAAGGGTTTTGACG 65272965 Query 48716 AAAATCTGCATC----GTGTCTTGATCGAAGAAAGA 48747 || ||||||||| | | ||||| ||| ||||| Sbjct 65272964 AAGATCTGCATCTTTGGAGAGTTGATTGAAAAAAGA 65272929 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| || | ||| || || | ||||| || ||||| || ||||| ||||||||| Sbjct 65274092 CCTCCACGAAGCCTCAAAACAAGGTGAAGGGTCGATTCCTTCTGGATGTTATAATCAGCC 65274033 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || | | | ||||| |||||||| || | | || ||||| || || || ||| Sbjct 65274032 AAGGTCCTCCCATCCTCAAGCTGCTTCCCTGCAAAGATCAAACGTTGTTGGTCTGGCGGG 65273973 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | |||||||||| ||| ||| ||| | | | ||||| || | | |||| | Sbjct 65273972 ATCCCTTCCTTGTCCTGAATCTTCGCCTTTACATTGTCGATGGTGTCCGAACTCTCCACC 65273913 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || ||||| | |||||||| || |||||||| Sbjct 65273912 TCCAAGGTGATGGTCTTGCCGGTCAAGGTTTTCACGAAGATCTGCAT 65273866 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 48514 TAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTC 48573 |||||| ||||| || || ||||| |||||||| || || || | ||| | || Sbjct 66881825 TAACACCAAATGGAGGGTCGATTCCTTCTGAATGTTATAGTCCGCAAGAGTTCGGCCATC 66881884 Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633 || |||||||| || | |||| || | |||||| ||| || | | |||||| || Sbjct 66881885 TTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCCGGTGGGATCCCTTCCTTATC 66881944 Query 48634 CATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 | ||| || ||| | | | || ||||| | | |||| ||| | || || || Sbjct 66881945 CTGAATCTTGGCCTTAACATTATCAATCGTATCAGAACTCTCCACCTCCAACGTAATAGT 66882004 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| |||||||| ||||| ||||||||||||||| Sbjct 66882005 TTTTCCGGTGAGGGTTTTTACAAAAATCTGCATC 66882038 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| || | | ||| || ||||| || || |||||||| ||||| || || || Sbjct 66881355 CCTCCTCGAAGTCGTAAAACCAAATGCAGGGTCGATTCCTTTTGGATGTTATAGTCTGC- 66881413 Query 48560 AATTGTCG-CTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || |||| | | ||||| |||||||| ||| | |||| || | |||||| || || Sbjct 66881414 AAGTGTCCTCCCATCCTCAAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGAGG 66881473 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||||||| ||||||| |||| | | ||||| || | ||| Sbjct 66881474 AATCCCCTCCTTGTCCTGAATTTTCGCTTTGACATTGTCAATGGTGTCCGAGCTCTCGAC 66881533 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | || |||||||||||||| | || ||||| || ||||||||| Sbjct 66881534 CTCCAGGGTGATGGTTTTACCGGTCAAGGTCTTCACGAATATCTGCATC 66881582 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || ||||||||||| ||||| || ||||||| ||||| || ||| || | Sbjct 65273372 TCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCGTCCTCGAGCTGTTTTCCGGCGAAG 65273313 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | ||||||||| || || | | ||||||||| |||||| ||| | | Sbjct 65273312 ATAAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGAATTTTAGACTTCACATTA 65273253 Query 48656 GCTATGGTATCGGTAGACTC-CGTC-TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | ||||| |||| || ||| || | |||| || ||||| || ||||| | ||||| | Sbjct 65273252 TCGATGGTGTCGG-AG-CTCTCGACTTCGAGGGTGATGGTCTTGCCGGTTAAGGTTTTGA 65273195 Query 48714 CAAAAATCTGCAT 48726 | || |||||||| Sbjct 65273194 CGAAGATCTGCAT 65273182 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || ||||||||||| ||||| || ||||||| ||||| || ||| || | Sbjct 65273600 TCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCGTCCTCGAGCTGTTTGCCGGCGAAG 65273541 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | ||||||||| || || | | ||||||||| |||||| ||| | | Sbjct 65273540 ATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGAATTTTAGACTTTACATTA 65273481 Query 48656 GCTATGGTATCGGTAGACTC-CGTC-TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | ||||| || | || ||| || | |||| || ||||| || ||||| | |||||| | Sbjct 65273480 TCGATGGTGTCAG-AG-CTCTCGACTTCGAGGGTGATGGTCTTGCCGGTTAAAGTTTTGA 65273423 Query 48714 CAAAAATCTGCAT 48726 | || |||||||| Sbjct 65273422 CGAAGATCTGCAT 65273410 >seq10 Length=62175169 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG-TCCTCCAGCTGCTTACCGCCGTA 48594 ||||| ||||| |||||||||||||| ||| || || |||| ||| || || || | Sbjct 51861323 TCCTTCTGAATATTGTAATCAGCCAAA-GTCCTTCCATCTTCCAACTGTTTCCCAGCGAA 51861265 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| || | |||||||| || | | ||| |||||| ||| ||| ||| | | Sbjct 51861264 AATCAACCTTTGCTGATCTGGTGGAATCCCTTCTTTGTCCTGAATCTTCGCCTTAACATT 51861205 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || ||||||| | |||| ||| | ||||||||||| || || | || || || Sbjct 51861204 GTCGATCGTATCGGAACTCTCCACCTCCAAAGTTATGGTTTTCCCAGTCAACGTCTTGAC 51861145 Query 48715 AAAAATCTGCATC 48727 |||||||||||| Sbjct 51861144 GAAAATCTGCATC 51861132 >seq6 Length=51074515 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTC-GCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 || || || ||||| ||||| || || ||| | |||| || ||||| || || || | Sbjct 42745164 TCTTTCTGGATGTTATAATCGGC-AAGGGTCCGACCGTCTTCGAGCTGTTTGCCAGCGAA 42745106 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 ||| | ||||||||| || || | | ||||||||| || || ||||| | Sbjct 42745105 AATGAGACGCTGCTGGTCGGGTGGGATCCCTTCCTTGTCTTGGATCTTGGCCTTGACGTT 42745046 Query 48653 GACGCTATGGTATCGGTAGACTCCGTC-TCGACTGTTATGGTTTTACCGGTGAGAGTTTT 48711 | || ||||| |||| || | || | |||| ||||||||| || ||||| || ||||| Sbjct 42745045 GTCG--ATGGTGTCGG-AGCTTTCGACCTCGAGTGTTATGGTCTTGCCGGTAAGGGTTTT 42744989 Query 48712 CACAAAAATCTGCATC 48727 |||||| ||||||||| Sbjct 42744988 CACAAAGATCTGCATC 42744973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421245891445034