Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20]
1,034 sequences; 761,565,430 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq1 116 2e-21
seq8 114 7e-21
seq5 114 7e-21
seq11 113 2e-20
seq9 113 2e-20
seq12 109 3e-19
seq4 107 1e-18
seq7 105 3e-18
seq6 104 1e-17
seq2 102 4e-17
seq3 100 1e-16
>seq1
Length=55868233
Score = 116 bits (128), Expect = 2e-21
Identities = 88/103 (85%), Gaps = 1/103 (1%)
Strand=Plus/Minus
Query 11437 AATTAATAAAAAATCAAA-TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495
|| ||| |||| || ||| |||||||||| | | |||||||| ||||||||||||||||
Sbjct 40807585 AAATAAAAAAAGATAAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATT 40807526
Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGAT 11538
||||||||||||| |||| |||||||||| |||| |||||||
Sbjct 40807525 AGCACGACGCTCTAACCAGCTGAGCTAATAGGCCTGCGACGAT 40807483
>seq8
Length=57128820
Score = 114 bits (126), Expect = 7e-21
Identities = 95/114 (83%), Gaps = 6/114 (5%)
Strand=Plus/Minus
Query 11427 GGAAATATA--GAATTAATAAAAA---ATCAAATTGGCCCATGAAAGGATCGAACCTTCG 11481
||||||| | ||| |||||||| ||||| | |||||||| | | |||||||| ||
Sbjct 52776930 GGAAATAAAAAGAAAAAATAAAAAGATATCAAGT-GGCCCATGCAGGTCTCGAACCTGCG 52776872
Query 11482 ACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGAC 11535
||||||||||||||||||||||||||| ||||||||||||||| |||| | |||
Sbjct 52776871 ACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCCATTGAC 52776818
Score = 102 bits (112), Expect = 4e-17
Identities = 72/82 (88%), Gaps = 1/82 (1%)
Strand=Plus/Minus
Query 11448 AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTC 11507
|| ||||| |||||||| | | |||||||| ||||||| ||||||||||||| ||||||
Sbjct 1359563 AAACAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTGGCGTTATTAGCACCACGCTC 1359505
Query 11508 TRACCAACTGAGCTAATGGGCC 11529
| ||||||||||||||||||||
Sbjct 1359504 TAACCAACTGAGCTAATGGGCC 1359483
>seq5
Length=64140413
Score = 114 bits (126), Expect = 7e-21
Identities = 76/84 (90%), Gaps = 1/84 (1%)
Strand=Plus/Plus
Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505
|||||||||| |||||||| | | |||||||| ||||||||||||||||||||||||||
Sbjct 54611668 AAAATCAAAT-GGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 54611726
Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529
||| ||||||||||||||| ||||
Sbjct 54611727 TCTAACCAACTGAGCTAATAGGCC 54611750
>seq11
Length=62681010
Score = 113 bits (124), Expect = 2e-20
Identities = 78/89 (88%), Gaps = 4/89 (4%)
Strand=Plus/Minus
Query 11445 AAAAATCAAA----TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
||||| |||| |||||||||| | ||||||||||| |||||||||||||||||||||
Sbjct 17660770 AAAAAACAAAATTGTTGGCCCATGCAGGGATCGAACCTGCGACCTTCGCGTTATTAGCAC 17660711
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| |||| |||||||||| ||||
Sbjct 17660710 GACGCTCTAACCAGCTGAGCTAATAGGCC 17660682
Score = 109 bits (120), Expect = 3e-19
Identities = 74/84 (88%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 11448 AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTC 11507
|| |||| ||||||||| | | |||||| | ||||||||||||||||||||||||||||
Sbjct 55267111 AAACAAAGTGGCCCATGCAGGTCTCGAACTTGCGACCTTCGCGTTATTAGCACGACGCTC 55267052
Query 11508 TRACCAACTGAGCTAATGGGCCGT 11531
| ||||||||||||||| ||||||
Sbjct 55267051 TAACCAACTGAGCTAATAGGCCGT 55267028
Score = 107 bits (118), Expect = 1e-18
Identities = 70/78 (90%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 55264963 AAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 55264904
Query 11512 CAACTGAGCTAATGGGCC 11529
||||||||||||| ||||
Sbjct 55264903 CAACTGAGCTAATAGGCC 55264886
Score = 105 bits (116), Expect = 3e-18
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512
|| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 6408756 AAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 6408697
Query 11513 AACTGAGCTAATGGGCC 11529
|||||||||||| ||||
Sbjct 6408696 AACTGAGCTAATAGGCC 6408680
>seq9
Length=70713020
Score = 113 bits (124), Expect = 2e-20
Identities = 75/84 (89%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505
||||| | ||||||||||| | | |||||||| ||||||||||||||||||||||||||
Sbjct 28509447 AAAATAAGATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 28509388
Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529
||| ||||||||||||||| ||||
Sbjct 28509387 TCTAACCAACTGAGCTAATAGGCC 28509364
Score = 111 bits (122), Expect = 8e-20
Identities = 83/98 (85%), Gaps = 5/98 (5%)
Strand=Plus/Minus
Query 11437 AATTAATAAAAAATCAAAT-----TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491
|| ||| ||||||| |||| ||||||||| | | |||||||| ||||||||||||
Sbjct 27313590 AAGTAAAAAAAAATGAAATACTAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGT 27313531
Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||||||||| ||||||||||||||| ||||
Sbjct 27313530 TATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 27313493
Score = 109 bits (120), Expect = 3e-19
Identities = 71/79 (90%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct 27383892 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 27383951
Query 11516 TGAGCTAATGGGCCGTCGA 11534
||||||||| |||||||||
Sbjct 27383952 TGAGCTAATAGGCCGTCGA 27383970
Score = 105 bits (116), Expect = 3e-18
Identities = 71/80 (89%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
|||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 27383400 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 27383459
Query 11515 CTGAGCTAATGGGCCGTCGA 11534
|||||||||| |||||| ||
Sbjct 27383460 CTGAGCTAATAGGCCGTTGA 27383479
Score = 104 bits (114), Expect = 1e-17
Identities = 70/79 (89%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct 27313257 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 27313198
Query 11516 TGAGCTAATGGGCCGTCGA 11534
||||||||| |||||| ||
Sbjct 27313197 TGAGCTAATAGGCCGTTGA 27313179
Score = 104 bits (114), Expect = 1e-17
Identities = 70/79 (89%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct 27383563 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 27383622
Query 11516 TGAGCTAATGGGCCGTCGA 11534
||||||||| |||||| ||
Sbjct 27383623 TGAGCTAATAGGCCGTTGA 27383641
Score = 104 bits (114), Expect = 1e-17
Identities = 70/79 (89%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||| ||||||| |||| |
Sbjct 27384059 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACAACGCTCTAACCAGC 27384118
Query 11516 TGAGCTAATGGGCCGTCGA 11534
||||||||| |||||||||
Sbjct 27384119 TGAGCTAATAGGCCGTCGA 27384137
Score = 104 bits (114), Expect = 1e-17
Identities = 70/79 (89%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct 29255223 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 29255164
Query 11516 TGAGCTAATGGGCCGTCGA 11534
||||||||| |||||| ||
Sbjct 29255163 TGAGCTAATAGGCCGTTGA 29255145
Score = 102 bits (112), Expect = 4e-17
Identities = 78/93 (84%), Gaps = 4/93 (4%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct 27313412 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 27313353
Query 11516 TGAGCTAATGGGCCGTCGACGATTGTGATTTTT 11548
||||||||| |||| | | |||| ||||||
Sbjct 27313352 TGAGCTAATAGGCCTTTG----TTGTCATTTTT 27313324
Score = 102 bits (112), Expect = 4e-17
Identities = 67/75 (89%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct 27383725 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 27383784
Query 11516 TGAGCTAATGGGCCG 11530
||||||||| |||||
Sbjct 27383785 TGAGCTAATAGGCCG 27383799
Score = 102 bits (112), Expect = 4e-17
Identities = 86/106 (81%), Gaps = 3/106 (3%)
Strand=Plus/Plus
Query 11429 AAATATAGAATTAATAAAAAATCAAATT---GGCCCATGAAAGGATCGAACCTTCGACCT 11485
||| | | ||| || ||||||| ||| |||||||| | | |||||||| |||||
Sbjct 27384365 AAACAAAAAATAAAGAAAAAATACCATTAATGGCCCATGCAGGTTTCGAACCTGTGACCT 27384424
Query 11486 TCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531
||||||||||||||||||||||| |||| |||||||||| ||||||
Sbjct 27384425 TCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCCGT 27384470
Score = 93.3 bits (102), Expect = 2e-14
Identities = 72/86 (84%), Gaps = 4/86 (5%)
Strand=Plus/Plus
Query 11453 AATTGGCCCATGAAAGGATCGAACC----TTCGACCTTCGCGTTATTAGCACGACGCTCT 11508
|| ||||||||| | | ||||||| | |||||||||||||||||||||||||||||
Sbjct 27384223 AAATGGCCCATGCAGGTCTCGAACCGACCTGCGACCTTCGCGTTATTAGCACGACGCTCT 27384282
Query 11509 RACCAACTGAGCTAATGGGCCGTCGA 11534
|||| |||||||||| |||||| ||
Sbjct 27384283 AACCAGCTGAGCTAATAGGCCGTTGA 27384308
>seq12
Length=35429946
Score = 109 bits (120), Expect = 3e-19
Identities = 77/89 (87%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| || |||| | | ||||||||| | | |||||||| |||||||||||||||||||||
Sbjct 5782166 AAAAACAAATAACAGTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCAC 5782225
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| ||||||||||||||| ||||
Sbjct 5782226 GACGCTCTAACCAACTGAGCTAATAGGCC 5782254
>seq4
Length=62178258
Score = 107 bits (118), Expect = 1e-18
Identities = 79/92 (86%), Gaps = 3/92 (3%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497
|| ||||| | |||| ||||||||| | | |||||||| ||||||||||||||||||
Sbjct 6336446 AAGAAAAATTAAAATAGATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAG 6336505
Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||| ||||||||||||||| ||||
Sbjct 6336506 CACGACGCTCTAACCAACTGAGCTAATAGGCC 6336537
Score = 107 bits (118), Expect = 1e-18
Identities = 78/90 (87%), Gaps = 2/90 (2%)
Strand=Plus/Minus
Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499
||||| ||| ||| ||||||||| | | |||||||| ||||||||||||||||||||
Sbjct 21360785 TAATACAAATGCAA--TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCA 21360728
Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||| ||||||||||||||| ||||
Sbjct 21360727 CGACGCTCTAACCAACTGAGCTAATAGGCC 21360698
>seq7
Length=60982465
Score = 105 bits (116), Expect = 3e-18
Identities = 77/89 (87%), Gaps = 1/89 (1%)
Strand=Plus/Plus
Query 11442 ATAAAA-AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|||||| ||| | | ||||||||| | | |||||||| |||||||||||||||||||||
Sbjct 21858565 ATAAAATAATGATAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 21858624
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| |||| |||||||||| ||||
Sbjct 21858625 GACGCTCTAACCAGCTGAGCTAATAGGCC 21858653
Score = 104 bits (114), Expect = 1e-17
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 18920562 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 18920503
Query 11516 TGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 18920502 TGAGCTAATAGGCC 18920489
>seq6
Length=51074515
Score = 104 bits (114), Expect = 1e-17
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 48356308 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 48356249
Query 11516 TGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 48356248 TGAGCTAATAGGCC 48356235
>seq2
Length=62769430
Score = 102 bits (112), Expect = 4e-17
Identities = 85/101 (84%), Gaps = 4/101 (4%)
Strand=Plus/Minus
Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505
|||| ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||
Sbjct 13179129 AAAAACAA--TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 13179072
Query 11506 TCTRACCAACTGAGCTAATGGGCC-GTCGACGATTGTGATT 11545
||| |||| |||||||||| |||| || ||| ||||| ||
Sbjct 13179071 TCTAACCAGCTGAGCTAATAGGCCAGTTGAC-CTTGTGCTT 13179032
>seq3
Length=45765648
Score = 100 bits (110), Expect = 1e-16
Identities = 70/79 (89%), Gaps = 1/79 (1%)
Strand=Plus/Plus
Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510
|||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |
Sbjct 10983768 AAATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAA 10983827
Query 11511 CCAACTGAGCTAATGGGCC 11529
||| |||||||||| ||||
Sbjct 10983828 CCAGCTGAGCTAATAGGCC 10983846
Lambda K H
0.638 0.409 0.919
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261487904720584
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |