Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq13 167 4e-37 seq3 150 3e-32 seq4 143 4e-30 seq9 125 1e-24 >seq13 Length=58321163 Score = 167 bits (184), Expect = 4e-37 Identities = 181/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||||||||| || || ||||| || ||||||||| ||||||||||||| ||||| Sbjct 57767732 GATAACATCCAAGGTATTACTAAGCCGGCCATCCGTCGTTTGGCTCGTCGTGGAGGAGTT 57767791 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | || ||| ||| |||||||||| | | | || |||||||| ||| | || Sbjct 57767792 AAGAGAATCAGTGGCTTGATCTATGAAGAAACCAGAGGAGTATTGAAGATTTTCTTGGAG 57767851 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | ||||| | || || |||||||| | | | ||||| || || || Sbjct 57767852 AACGTCATTCGCGATGCAGTGACTTACACTGAGCACGCCAGAAGGAAGACCGTGACGGCC 57767911 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || ||||| |||||||| |||||||||| | ||||| |||||| ||||| Sbjct 57767912 ATGGATGTTGTTTATGCTTTGAAACGGCAAGGCCGTACTCTCTATGGATTTGGAGGTTAA 57767971 Score = 147 bits (162), Expect = 3e-31 Identities = 169/225 (75%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | || || || ||||||||||| |||||||| || || || || Sbjct 57858954 GCAAAGCGCCACCGCAAGGTC-CTCCGTGATAACATCCAGGGAATCACGAAACCGGCGAT 57858896 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| |||||| | || || ||||||||| || ||| ||| |||| || || | Sbjct 57858895 CCGGCGTCTAGCTCGTAGGGGAGGTGTCAAGCGTATCAGTGGCTTGATCTACGAGGAAAC 57858836 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || |||||||||||| | ||| ||| |||| || || | |||||| || Sbjct 57858835 CCGTGGAGTGTTGAAGATCTTCTTGGAGAACGTGATCCGCGACGCCGTGACCTATACTGA 57858776 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 |||||| | | ||||| || ||| |||||||| |||| ||||| Sbjct 57858775 GCACGCCAGGAGAAAGACGGTGACCGCCATGGATGTCGTTTATGC 57858731 >seq3 Length=45765648 Score = 150 bits (166), Expect = 3e-32 Identities = 184/251 (73%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| ||||||||||| || || ||||||||||| || || || | | |||||| | || Sbjct 4712291 TCTCCGAGATAACATTCAGGGCATCACCAAGCCGGCGATTCGGAGATTAGCTCGTAGAGG 4712350 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || ||| | | ||| ||| |||| || || | ||||| |||| | |||||||| Sbjct 4712351 CGGCGTGAAGAGGATTAGTGGCTTGATCTACGAGGAAACTCGTGGTGTTCTCAAGATCTT 4712410 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| | | |||||| | |||||| || |||||| |||||||||| ||||||||||| Sbjct 4712411 CCTTGAAAACGTTATACGTGATGCCGTCACCTATACGGAGCACGCTAGGCGTAAGACTGT 4712470 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||| | |||||| |||| ||||| | || | ||||| | | |||| ||||| || Sbjct 4712471 CACCGCTATGGATGTCGTTTATGCTCTCAAGAGACAAGGAAGGACTCTTTACGGTTTCGG 4712530 Query 16693 AAGTTAATCTT 16703 ||| || || Sbjct 4712531 TGGTTGATTTT 4712541 Score = 143 bits (158), Expect = 4e-30 Identities = 178/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || ||||| || || || |||||||| || || || |||||||||||| | || || || Sbjct 39291276 GACAACATTCAGGGCATTACCAAGCCTGCGATTCGCCGTCTGGCTCGTAGGGGAGGTGTG 39291335 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | || || ||| |||| ||||| | || | || |||||||||||| | || Sbjct 39291336 AAGAGAATCAGCGGTTTGATCTACGAAGAAACCCGAGGCGTATTGAAGATCTTCTTGGAG 39291395 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | |||||| | || || || ||||| | | | |||||||| ||| || Sbjct 39291396 AACGTGATTCGTGATGCCGTGACATACACTGAACACGCCAGAAGGAAGACTGTTACCGCC 39291455 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || ||||| |||||| | |||||| | | | |||||||||||| ||||| Sbjct 39291456 ATGGATGTTGTTTATGCCTTGAAAAGGCAAGGCAGGACTCTCTATGGTTTTGGAGGTTAA 39291515 Query 16700 TCTT 16703 ||| Sbjct 39291516 GCTT 39291519 Score = 138 bits (152), Expect = 2e-28 Identities = 193/268 (72%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | | || || || ||||| ||||| ||||| || ||||| ||||| Sbjct 39777461 GCAAAGCGTCACCGTAAGGTC-CTCCGTGATAATATCCAGGGAATTACGAAGCCGGCTAT 39777403 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| |||||||| | || || |||||||| || || ||| |||| ||||| | Sbjct 39777402 TCGGCGTTTGGCTCGTAGGGGAGGCGTCAAGCGCATCAGCGGCTTGATCTACGAAGAAAC 39777343 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||| | ||||||||| | ||| ||| || | ||| ||| || ||| ||||| Sbjct 39777342 CCGTGGTGTTCTCAAGATCTTCTTGGAGAACGTGATTCGTGACGCTGTCACCTACACCGA 39777283 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | | |||||||| || | |||||| | || ||||| | || | || || Sbjct 39777282 GCACGCCAGGAGAAAGACTGTGACTGCTATGGATGTGGTTTATGCGCTCAAGAGGCAGGG 39777223 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | | ||||| || || ||||| Sbjct 39777222 CAGGACTTTGTATGGATTCGGTGGTTAA 39777195 >seq4 Length=62178258 Score = 143 bits (158), Expect = 4e-30 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| || || || ||||| || || || ||| |||||||||| || || | Sbjct 285475 GAGACAACATCCAGGGCATTACTAAGCCTGCCATTCGCCGTTTGGCTCGTCGAGGAGGTG 285416 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 ||||| | || ||| ||| |||||||||| | | | || |||||||| ||| | Sbjct 285415 TCAAGAGGATCAGTGGCTTGATCTATGAAGAAACCAGGGGAGTATTGAAGATTTTCTTGG 285356 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | ||||||| | |||||||||||||| | | ||||| || ||| Sbjct 285355 AGAATGTGATTCGTGATGCTGTGACTTATACCGAGCACGCCAGGAGGAAGACCGTTACCG 285296 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | || ||||| |||||| | || ||| | | | |||||||||||| ||| Sbjct 285295 CTATGGATGTTGTTTATGCCTTGAAAAGGCAGGGCAGGACTCTCTATGGTTTTGGAGGTT 285236 Query 16698 AA 16699 || Sbjct 285235 AA 285234 >seq9 Length=70713020 Score = 125 bits (138), Expect = 1e-24 Identities = 188/267 (70%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | ||| || ||||| ||||| || ||||| || || || || Sbjct 7419106 GCAAAGCGCCATCGTAAGGTTCTCCGTGATAATATCCAGGGTATCACAAAACCGGCAATT 7419047 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||||||| | || || ||||| ||| || || || |||| || || | Sbjct 7419046 CGGCGTTTGGCTCGTAGAGGAGGCGTCAAACGTATCAGCGGTTTAATCTACGAGGAAACC 7418987 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||||||||||||||| | ||| ||| || | |||||| | ||| ||||| Sbjct 7418986 CGTGGGGTTTTGAAGATCTTCTTGGAGAACGTGATTCGTGATGCAGTAACCTACACCGAA 7418927 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || | | |||||||| || | |||||| | || |||||| |||| | || ||| Sbjct 7418926 CATGCGAGGAGGAAGACTGTGACTGCTATGGATGTGGTTTATGCACTGAAGAGGCAGGGC 7418867 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | ||||| ||||| ||||| Sbjct 7418866 AGGACTTTGTATGGGTTTGGTGGTTAA 7418840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074254606562