Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20]
1,034 sequences; 761,565,430 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq13 167 4e-37
seq3 150 3e-32
seq4 143 4e-30
seq9 125 1e-24
>seq13
Length=58321163
Score = 167 bits (184), Expect = 4e-37
Identities = 181/240 (75%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|||||||||||||| || || ||||| || ||||||||| ||||||||||||| |||||
Sbjct 57767732 GATAACATCCAAGGTATTACTAAGCCGGCCATCCGTCGTTTGGCTCGTCGTGGAGGAGTT 57767791
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
||| | || ||| ||| |||||||||| | | | || |||||||| ||| | ||
Sbjct 57767792 AAGAGAATCAGTGGCTTGATCTATGAAGAAACCAGAGGAGTATTGAAGATTTTCTTGGAG 57767851
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| ||| || | ||||| | || || |||||||| | | | ||||| || || ||
Sbjct 57767852 AACGTCATTCGCGATGCAGTGACTTACACTGAGCACGCCAGAAGGAAGACCGTGACGGCC 57767911
Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||||| | || ||||| |||||||| |||||||||| | ||||| |||||| |||||
Sbjct 57767912 ATGGATGTTGTTTATGCTTTGAAACGGCAAGGCCGTACTCTCTATGGATTTGGAGGTTAA 57767971
Score = 147 bits (162), Expect = 3e-31
Identities = 169/225 (75%), Gaps = 2/225 (1%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| ||||| || |||| | || || || ||||||||||| |||||||| || || || ||
Sbjct 57858954 GCAAAGCGCCACCGCAAGGTC-CTCCGTGATAACATCCAGGGAATCACGAAACCGGCGAT 57858896
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| ||||| |||||| | || || ||||||||| || ||| ||| |||| || || |
Sbjct 57858895 CCGGCGTCTAGCTCGTAGGGGAGGTGTCAAGCGTATCAGTGGCTTGATCTACGAGGAAAC 57858836
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| || |||||||||||| | ||| ||| |||| || || | |||||| ||
Sbjct 57858835 CCGTGGAGTGTTGAAGATCTTCTTGGAGAACGTGATCCGCGACGCCGTGACCTATACTGA 57858776
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656
|||||| | | ||||| || ||| |||||||| |||| |||||
Sbjct 57858775 GCACGCCAGGAGAAAGACGGTGACCGCCATGGATGTCGTTTATGC 57858731
>seq3
Length=45765648
Score = 150 bits (166), Expect = 3e-32
Identities = 184/251 (73%), Gaps = 0/251 (0%)
Strand=Plus/Plus
Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512
||| ||||||||||| || || ||||||||||| || || || | | |||||| | ||
Sbjct 4712291 TCTCCGAGATAACATTCAGGGCATCACCAAGCCGGCGATTCGGAGATTAGCTCGTAGAGG 4712350
Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572
|| || ||| | | ||| ||| |||| || || | ||||| |||| | ||||||||
Sbjct 4712351 CGGCGTGAAGAGGATTAGTGGCTTGATCTACGAGGAAACTCGTGGTGTTCTCAAGATCTT 4712410
Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632
||| | | |||||| | |||||| || |||||| |||||||||| |||||||||||
Sbjct 4712411 CCTTGAAAACGTTATACGTGATGCCGTCACCTATACGGAGCACGCTAGGCGTAAGACTGT 4712470
Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|||| | |||||| |||| ||||| | || | ||||| | | |||| ||||| ||
Sbjct 4712471 CACCGCTATGGATGTCGTTTATGCTCTCAAGAGACAAGGAAGGACTCTTTACGGTTTCGG 4712530
Query 16693 AAGTTAATCTT 16703
||| || ||
Sbjct 4712531 TGGTTGATTTT 4712541
Score = 143 bits (158), Expect = 4e-30
Identities = 178/244 (73%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|| ||||| || || || |||||||| || || || |||||||||||| | || || ||
Sbjct 39291276 GACAACATTCAGGGCATTACCAAGCCTGCGATTCGCCGTCTGGCTCGTAGGGGAGGTGTG 39291335
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
||| | || || ||| |||| ||||| | || | || |||||||||||| | ||
Sbjct 39291336 AAGAGAATCAGCGGTTTGATCTACGAAGAAACCCGAGGCGTATTGAAGATCTTCTTGGAG 39291395
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| ||| || | |||||| | || || || ||||| | | | |||||||| ||| ||
Sbjct 39291396 AACGTGATTCGTGATGCCGTGACATACACTGAACACGCCAGAAGGAAGACTGTTACCGCC 39291455
Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||||| | || ||||| |||||| | |||||| | | | |||||||||||| |||||
Sbjct 39291456 ATGGATGTTGTTTATGCCTTGAAAAGGCAAGGCAGGACTCTCTATGGTTTTGGAGGTTAA 39291515
Query 16700 TCTT 16703
|||
Sbjct 39291516 GCTT 39291519
Score = 138 bits (152), Expect = 2e-28
Identities = 193/268 (72%), Gaps = 2/268 (1%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| || | | || || || ||||| ||||| ||||| || ||||| |||||
Sbjct 39777461 GCAAAGCGTCACCGTAAGGTC-CTCCGTGATAATATCCAGGGAATTACGAAGCCGGCTAT 39777403
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| ||| |||||||| | || || |||||||| || || ||| |||| ||||| |
Sbjct 39777402 TCGGCGTTTGGCTCGTAGGGGAGGCGTCAAGCGCATCAGCGGCTTGATCTACGAAGAAAC 39777343
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| |||| | ||||||||| | ||| ||| || | ||| ||| || ||| |||||
Sbjct 39777342 CCGTGGTGTTCTCAAGATCTTCTTGGAGAACGTGATTCGTGACGCTGTCACCTACACCGA 39777283
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| | | |||||||| || | |||||| | || ||||| | || | || ||
Sbjct 39777282 GCACGCCAGGAGAAAGACTGTGACTGCTATGGATGTGGTTTATGCGCTCAAGAGGCAGGG 39777223
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
| | | | ||||| || || |||||
Sbjct 39777222 CAGGACTTTGTATGGATTCGGTGGTTAA 39777195
>seq4
Length=62178258
Score = 143 bits (158), Expect = 4e-30
Identities = 177/242 (73%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| |||||||| || || || ||||| || || || ||| |||||||||| || || |
Sbjct 285475 GAGACAACATCCAGGGCATTACTAAGCCTGCCATTCGCCGTTTGGCTCGTCGAGGAGGTG 285416
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
||||| | || ||| ||| |||||||||| | | | || |||||||| ||| |
Sbjct 285415 TCAAGAGGATCAGTGGCTTGATCTATGAAGAAACCAGGGGAGTATTGAAGATTTTCTTGG 285356
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| || || | ||||||| | |||||||||||||| | | ||||| || |||
Sbjct 285355 AGAATGTGATTCGTGATGCTGTGACTTATACCGAGCACGCCAGGAGGAAGACCGTTACCG 285296
Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697
| |||||| | || ||||| |||||| | || ||| | | | |||||||||||| |||
Sbjct 285295 CTATGGATGTTGTTTATGCCTTGAAAAGGCAGGGCAGGACTCTCTATGGTTTTGGAGGTT 285236
Query 16698 AA 16699
||
Sbjct 285235 AA 285234
>seq9
Length=70713020
Score = 125 bits (138), Expect = 1e-24
Identities = 188/267 (70%), Gaps = 0/267 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||| ||||| | ||| || ||||| ||||| || ||||| || || || ||
Sbjct 7419106 GCAAAGCGCCATCGTAAGGTTCTCCGTGATAATATCCAGGGTATCACAAAACCGGCAATT 7419047
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||| |||||||| | || || ||||| ||| || || || |||| || || |
Sbjct 7419046 CGGCGTTTGGCTCGTAGAGGAGGCGTCAAACGTATCAGCGGTTTAATCTACGAGGAAACC 7418987
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| ||||||||||||||| | ||| ||| || | |||||| | ||| |||||
Sbjct 7418986 CGTGGGGTTTTGAAGATCTTCTTGGAGAACGTGATTCGTGATGCAGTAACCTACACCGAA 7418927
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| || | | |||||||| || | |||||| | || |||||| |||| | || |||
Sbjct 7418926 CATGCGAGGAGGAAGACTGTGACTGCTATGGATGTGGTTTATGCACTGAAGAGGCAGGGC 7418867
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699
| | | ||||| ||||| |||||
Sbjct 7418866 AGGACTTTGTATGGGTTTGGTGGTTAA 7418840
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79074254606562
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |