Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq71 91.5 3e-14 >seq71 Length=16584 Score = 91.5 bits (100), Expect = 3e-14 Identities = 217/325 (67%), Gaps = 5/325 (2%) Strand=Plus/Minus Query 7164 GAATCCTTTCCGATACCTACCACTC-TTCAATTCACTGTCTTTATCTATTACCACAAATC 7222 ||| |||||||| ||||| || ||| ||| | ||| |||||||| || || | ||| | Sbjct 12869 GAAACCTTTCCGGTACCTTCC-CTCGTTCTTATTACTATCTTTATCGATGACTAAAAACC 12811 Query 7223 CATATTTATTC---CAACATGCCGAGCATAAATCTCTGAATGAGTTGTATGGCATGTCCG 7279 | || || | | || || ||||||| | | |||||| | | | | | || | Sbjct 12810 CGTACTTGTCCTGCCAGCACACCGAGCAGATGTGTCTGAAATCTTCGAACGTGAAATCTG 12751 Query 7280 TATTGACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGA 7339 | ||||| ||||| || || || || || || | | || || ||| | |||| Sbjct 12750 TGTTGACGTGATCGTCGTAGATGTGTCGCAAGTTTGTATTGTCCTGTTTGAAAACTACGA 12691 Query 7340 GAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGAT 7399 | | ||| || ||||| | ||||| || || ||||| || | |||||||||||| | | Sbjct 12690 GCAGGTTAGCGTTATCGCGAATCAATTGTTTCGGTATGCGAGAATAAGTTTGACACAAGT 12631 Query 7400 AGAAGCTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTT 7459 |||| ||||| || |||||| ||||| | |||| | | || || |||| Sbjct 12630 AGAAACTGTCGACCGAGCTGTGTCTTCCCATACTGAAATATTCCCGCATCGCATTTTGTT 12571 Query 7460 TTTCACAAGCAACATCGTCAAATAT 7484 | |||||||| ||||| || || || Sbjct 12570 TGTCACAAGCGACATCATCGAAAAT 12546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97973196996836