Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq11 100 3e-16 seq1 86.0 7e-12 >seq11 Length=62681010 Score = 100 bits (110), Expect = 3e-16 Identities = 122/164 (74%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527 ||| ||| || || ||||| || || | ||||||||| | ||||| || || || | Sbjct 8942328 ACAGCAAGCAAGCGAAATCGCAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGA 8942269 Query 21528 ATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCA-AATGCTCCT 21586 | ||||| ||||||||||| || ||||||||||||||||||| || | || || ||| Sbjct 8942268 AAGTTAATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATA-TGGCACAGAAACTTCCG 8942210 Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTC 21630 || || || || || || ||| |||||| || | ||| ||||| Sbjct 8942209 GAGAAAAAGATCCCTTCTACGCAAGCAAAAGCGATTAACCGTTC 8942166 >seq1 Length=55868233 Score = 86.0 bits (94), Expect = 7e-12 Identities = 119/164 (73%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527 ||| ||| || ||||| || ||||| | ||||||||| | | || || | || || | Sbjct 54862753 ACAGCAAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTTGTTTGAGA 54862694 Query 21528 ATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCT 21586 | ||| | || |||||||| || | |||||||||||||||||| | | || | || || Sbjct 54862693 AAGTTTATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCG-CACAGAAACTGCCG 54862635 Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTC 21630 || || || ||||| || ||| ||| || || | ||| ||||| Sbjct 54862634 GAGAAAAATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTC 54862591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531893925182160