Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 1e-12 seq7 84.2 6e-11 seq2 84.2 6e-11 >seq1 Length=55868233 Score = 89.7 bits (98), Expect = 1e-12 Identities = 341/521 (65%), Gaps = 21/521 (4%) Strand=Plus/Plus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCATTCGCGGAACGTCTT 22497 || || || |||||||| |||||||||| || | | || || ||||| | Sbjct 54862540 AAAAAAGCCGATTGGGCTTTGAAATGGATCGACGGCGGCGAAGCTTTTGCCGAACGGTTA 54862599 Query 22498 ATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGG 22557 || || || ||| || |||||||| || || || || || ||||| || |||||| Sbjct 54862600 ATCGCTTTCGCTTGCGTAGAAGGCATATTTTTCTCCGGCAGTTTCTGTGCGATATTTTGG 54862659 Query 22558 CTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGAT 22617 ||||||| || | | ||||| || ||| || ||||| |||| || |||||| Sbjct 54862660 TTAAAAAAGCGCGGGTTAATGCCTGGATAAACTTTCTCAAACAAGTTGATCTCTCGAGAT 54862719 Query 22618 GAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAAACTT 22677 || ||||| ||| ||| ||||| || |||| || | || | || ||| || || Sbjct 54862720 GAAGGTCTCCATTGCGACTTTGCTTGCTTGCTGTA-CTCTCTCCTC-CAGTCA-AAGCT- 54862775 Query 22678 CCATATGAAACTGTACTTGAT----ATTATTACAAATGCAGTTGAACTTGAACGTCTATT 22733 | |||| | | ||| || | | |||| || || | || | || Sbjct 54862776 --AAGTGAAGA-GCGCGTGAAGGGAATAGTGAGGGATGCGGTGGATGTAGAGAGGGAGTT 54862832 Query 22734 TATTTGCGAGGCG-TTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACAT 22792 | | ||||| || || || | || | |||| || || | || | |||||| || Sbjct 54862833 TGTATGCGACGCTCTTCCCTGCGCGT-TAGTTGGGATGAACGGTGAGTTGATGAGTCAAT 54862891 Query 22793 ATATTAAATTTGTTGCAGATCG-TCTATTAATTTCACTCGGTTATG-CAAAGCAT-TATA 22849 | ||| | || ||||| ||||| | || | || | || |||| |||| || || | Sbjct 54862892 ACATTGAGTTCGTTGCGGATCGGTATAGGAGCTTTA---GGGTATGGCAAA--ATGTACA 54862946 Query 22850 ACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCT 22909 | | | ||| || ||||| ||||||||||| |||||| | |||| || |||||||||| Sbjct 54862947 ATGCGGCTAACCCTTTTGATTGGATGGAACTAATTTCATTGCAAGGGAAAACCAATTTCT 54863006 Query 22910 TCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 |||| || |||||||| || || || || |||| || ||| Sbjct 54863007 TCGAGAAGAGAGTTGGGGAGTATCAGAAGGCAGCGGTCATG 54863047 >seq7 Length=60982465 Score = 84.2 bits (92), Expect = 6e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 111696 ATGTGCCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCT 111755 |||| ||||| ||||| | | | | | | || ||||||||||||||||| |||||| Sbjct 47413479 ATGTTGCAGTTCTATGTTGCCAATGAGGAGTTATCTTGCCAAATGTATCAGCGTTCTGCT 47413538 Query 111756 GATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATC 111815 ||||| || | ||||| || ||||| |||||| ||| || || || || ||| | || Sbjct 47413539 GATATGGGCTTGGGTGTGCCATTTAACATTGCATCTTATGCTCTTCTGACATGCATGATT 47413598 Query 111816 GCTCATTTT 111824 |||||| || Sbjct 47413599 GCTCATGTT 47413607 >seq2 Length=62769430 Score = 84.2 bits (92), Expect = 6e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 111729 TCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCA 111788 || ||||||||||||||||| ||||||||||| || | ||||| || ||||| |||||| Sbjct 334662 TCTTGCCAAATGTATCAGCGTTCTGCTGATATGGGCTTGGGTGTGCCATTTAACATTGCA 334721 Query 111789 AGTTACGCACTACTTACTTGCTTAATCGCTCATTTT 111824 ||| || || || || ||| | || |||||| || Sbjct 334722 TCTTATGCTCTCCTGACATGCATGATTGCTCATGTT 334757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303336333008588