Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq6 111 1e-19 seq2 100 2e-16 seq511 93.3 4e-14 seq12 93.3 4e-14 seq9 93.3 4e-14 >seq6 Length=51074515 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||||||||| || | || || ||||| || ||| | || || | | Sbjct 42745430 ATGCAGATTTTTGTCAAGACTTTGACCGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 42745489 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || ||| |||| || || ||| ||| ||||| ||||| |||| |||||| Sbjct 42745490 GATACCATTG-ACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCA 42745548 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| || || | ||| ||||||||||| ||||||| | || |||| |||||||| Sbjct 42745549 GCAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAA 42745608 Query 115465 CATTCAAAAAGAGTCTAC 115482 |||||| ||||||||||| Sbjct 42745609 CATTCAGAAAGAGTCTAC 42745626 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA-CG-GAGTCCA 115343 |||||||| ||||||||||| | || || || ||||| ||| ||||| || |||| | Sbjct 42745202 ATGCAAATCTTTGTCAAAACCTTAACCGGCAAGACCATCACCCTCGAAGTCGAGAGTTC- 42745260 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 |||||| | | |||| || || || ||| || || |||||| |||| ||| Sbjct 42745261 -CGACACCATCG-ACAACGTTAAGGCCAAGATTCAAGACAAGGAAGGCATCCCACCTGAC 42745318 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 || || | | || | || ||||||||||| ||||||| | ||| |||| |||||| Sbjct 42745319 CAACAGCGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGGAGGACCTTGGCTGATTAT 42745378 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || ||||| || || || | || | || ||||| | || ||||| Sbjct 42745379 AATATCCAAAAGGAATCCACCCTTCACCTTGTTTTGAGGCTTCGTGGAGG 42745428 >seq2 Length=62769430 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| ||||||||||| ||||||||||| || | || |||| Sbjct 10571890 ATGCAGATCTTTGTAAAAACGCTCACTGGAAAAACCATCACTTTAGAGGTGGAGAGTTCT 10571949 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | || || || ||| || || || ||| |||| || ||| Sbjct 10571950 GATACAATTGATAACGTTAAGGCCAAGATTCAGGACAAGGAGGGCATCCCACCAGACCAG 10572009 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || | |||| ||| || ||||| | ||||||| || |||| | || || |||||| Sbjct 10572010 CAGAGGTTAATTTTTGCTGGGAAACAGCTTGAAGATGGCAGAACCCTTGCAGACTATAAC 10572069 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||||||| |||||||| | ||| |||||||| Sbjct 10572070 ATTCAAAAGGAGTCTACCCTCCATTTGGTGTTG 10572102 Score = 100 bits (110), Expect = 2e-16 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA-CG-GAGTCCA 115343 |||||||| ||||||||||| ||||| ||||| || || ||| | || || |||| | Sbjct 27609460 ATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACAATCACCTTGGAGGTCGAGAGTTCG 27609519 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | | || ||| | || ||| || ||| || |||||||| |||| || | Sbjct 27609520 G--ATACCATTGATAATGTGAAAGCCAAGATTCAGGACAAAGAAGGAATCCCACCAGACC 27609577 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | |||||| | |||| ||| || |||||| | ||||||| | ||| | |||||||||| Sbjct 27609578 AACAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTGCCGATTATA 27609637 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGT 115494 | || || || ||||||||| | ||| |||| Sbjct 27609638 ATATCCAGAAGGAGTCTACTCTCCATTTGGT 27609668 >seq511 Length=6087 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 |||||||||||| |||| ||||||||| || | |||| ||| || || ||| | ||| Sbjct 348 GATAAAGAAGGCATCCCTCCTGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTGGAA 407 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| | |||| | || ||||||||||| ||||| ||||| ||| | || | ||||| Sbjct 408 GATGGCCGAACCCTAGCTGATTATAACATCCAAAAGGAGTCCACTCTTCACCTAGTGTTA 467 Query 115499 AGATTGCGAGGAGGAA 115514 || | | ||||||| Sbjct 468 AGGCTTAGGGGAGGAA 483 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 |||||||| ||| |||| ||||||||| || | |||| ||| || || ||| ||||| Sbjct 5624 GATAAAGAGGGCATCCCTCCTGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTAGAA 5683 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| | |||| | || ||||||||||| ||||| ||||| ||| | || | || || Sbjct 5684 GATGGCCGAACCCTAGCTGATTATAACATCCAAAAGGAGTCCACTCTTCACCTAGTTTTA 5743 Query 115499 AGATTGCGAGGAGGAA 115514 || | ||||||||| Sbjct 5744 AGGCTTAGAGGAGGAA 5759 >seq12 Length=35429946 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 |||||||| ||| |||| ||||||||| || | |||| ||| || || ||| ||||| Sbjct 4807309 GATAAAGAGGGCATCCCTCCTGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTAGAA 4807250 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| | |||| | || ||||||||||| ||||| ||||| ||| | || | ||||| Sbjct 4807249 GATGGCCGAACCCTAGCTGATTATAACATCCAAAAGGAGTCCACTCTTCACCTAGTGTTA 4807190 Query 115499 AGATTGCGAGGAGGAA 115514 || | | ||||||| Sbjct 4807189 AGGCTTAGGGGAGGAA 4807174 >seq9 Length=70713020 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| || || ||||| ||||| || ||||| | ||| ||| Sbjct 66881809 ATGCAAATTTTTGTGAAGACTCTCACCGGAAAGACTATTACTTTGGAAGTTGAGAGTTCT 66881750 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| |||||| || || || || ||||| | || ||||| Sbjct 66881749 GACACCATTG-ACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGGATTCCACCAGATCA 66881691 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || | |||| ||| |||||||| | ||||||| | || | || |||||||| Sbjct 66881690 GCAGAGGTTGATTTTTGCTGGCAAACAGCTCGAAGATGGTAGGACACTTGCAGATTATAA 66881631 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || ||||||||||| | || ||||| | || | |||||||| Sbjct 66881630 TATCCAGAAAGAGTCTACCCTCCACTTGGTGCTCCGACTTCGAGGAGG 66881583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425338639868080