Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq11 150 2e-31 seq1 132 6e-26 seq3 109 7e-19 seq2 96.9 4e-15 >seq11 Length=62681010 Score = 150 bits (166), Expect = 2e-31 Identities = 388/586 (66%), Gaps = 4/586 (1%) Strand=Plus/Minus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| ||| || |||||||||||||| ||||| || |||| ||||| ||||| || | Sbjct 8942328 ACAGCAAGCAAGCGAAATCGCAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGA 8942269 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 32771 | || | ||||||||||| || | |||||| | ||||||||||| | || || ||| Sbjct 8942268 AAGTTAATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGG-CACAGAAACTTCCG 8942210 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 32831 || || || || |||||||| ||||| || || | | || | || | | | Sbjct 8942209 GAGAAAAAGATCCCTTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCG 8942150 Query 32832 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 32891 | | ||||| || |||||| ||||| || || ||||| |||| ||||| || Sbjct 8942149 CCGTCGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATG 8942090 Query 32892 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 32951 || || ||| ||| ||||||| |||||| | || || || | | ||||| Sbjct 8942089 GCGCGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTG 8942030 Query 32952 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGT-AGAAGCATCTAGCCTC 33010 ||||| || || || || ||||| || || ||||| || || | | ||||| | ||||| Sbjct 8942029 TACATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCA-CGCGCCTC 8941971 Query 33011 GGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 33070 || ||||| || ||| | || || | || | || ||| ||||| || || Sbjct 8941970 GGAGATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGA 8941911 Query 33071 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATT 33130 ||| || ||||| || | || || | || || | | || || | || || | | Sbjct 8941910 GGCGGCGAAAAAGGCGAGAACGTGACTAATGAAGTGGTGCTCATCGGCGGTGAGAGTTTC 8941851 Query 33131 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33190 ||| | | | ||| ||| | ||| ||||| || | |||||||| || || || || Sbjct 8941850 CCAGTGACGAAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGC 8941791 Query 33191 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 33236 || || ||||| | ||| | || | ||||| || ||||| ||| Sbjct 8941790 TTTCTTGTACATTTCCCATACTTCTGGGTATTGGATCGGAAACATA 8941745 >seq1 Length=55868233 Score = 132 bits (146), Expect = 6e-26 Identities = 387/587 (66%), Gaps = 8/587 (1%) Strand=Plus/Minus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| ||| || || || ||||| || ||||| || |||| | || || | ||| || | Sbjct 54862753 ACAGCAAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTTGTTTGAGA 54862694 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG-ACGCAAA-TGATCC 32770 | || ||| ||||||| || |||||||| | ||||||||| | || ||| || || Sbjct 54862693 AAGTTTATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCACAGAAACTG--CC 54862636 Query 32771 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT 32830 || || || || |||||||| || || || || | | || || || | ||| Sbjct 54862635 GGAGAAAAATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCC 54862576 Query 32831 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTAT 32890 | | | ||||| || |||||||||||| || || || || |||| || || | Sbjct 54862575 GCCGTCGATCCATTTCAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGT 54862516 Query 32891 AGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACT 32950 ||| | ||||| ||| ||||| | |||||||| ||| || || | | ||||| Sbjct 54862515 AGCGTGGAAGAGGCGGTTCTTTTCGGTGGAATCTTTAATATAAGTTTCGAGGAGGAGACT 54862456 Query 32951 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA-GCATCTAGCCT 33009 |||||| || || || || || || ||||| ||||| ||||| || || ||| | |||| Sbjct 54862455 ATACATCTCAGAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAATGCA-CGCGCCT 54862397 Query 33010 CGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 33069 | | || || || ||| | || || | || | |||||| || || || || Sbjct 54862396 CCGCGATTTGGACCTCTTTCATGAAGCGAACGGCGAGATTTTCTAGGACGATGCCATCGG 54862337 Query 33070 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTA 33128 || || || || || | ||||| | || || | |||||| || ||| || || Sbjct 54862336 ATGCGGCGAAGAAGGCAAGGACATGACTGATGAAGTGGCGTTCGTC-GGCGTTAAGATTT 54862278 Query 33129 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 33188 | ||| | | ||| ||| | ||| ||||| || | |||||||| || || || Sbjct 54862277 TGCCAGTGTGGAAGATCGGAAGAGAGATCAACTTCCTCGGCAGTCCAAAAAGAGGCTTCG 54862218 Query 33189 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235 || || || ||||| | ||| || | | ||||| ||||| || || Sbjct 54862217 GCTTTCTTGTACATTTCCCATATCTGTGGGTATTGGATTGGGAACAT 54862171 >seq3 Length=45765648 Score = 109 bits (120), Expect = 7e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||| ||||| || | || |||||||| |||||||||||| ||| ||| | | | Sbjct 6820279 AGTTCCAGCATTGAAAAGTGTGGGAGAAGCATGAGTAAACCATCTTTGAGACATCATGTG 6820338 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || | ||||| || || || || | ||||||||| ||||| || | |||||| Sbjct 6820339 ATAAGTTTTTATAGCAGAATCAATGTCATTCTTATGAATTCCAACTGCAACCCTCATTAA 6820398 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||| || || ||||| | | ||| | | |||||| | |||||| | || | Sbjct 6820399 CATGTGTTGGGGCCTTTCTATAACCTTCCCTTGAACTTTCAAGAGGTAGGACCTCTCAAG 6820458 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||||| ||||||||||| | || |||||| || || || || || Sbjct 6820459 GGTTTTGAAACCAAAATAATCATAGTCAAAGTCCCGATCATATATGAT 6820506 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 ||||| ||||| | || | ||| |||| ||| | || | || |||||| | ||| ||| Sbjct 6819936 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACCCGCAGCATTGGGACAATGCCA 6819995 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 || ||||||||||| || || || || || | | || |||||||| || ||| Sbjct 6819996 TTAGATGTACCATTTGTTCCACGAATGTAACTACTTGTAGCCCGAATATTGTGAACTGAG 6820055 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| ||||| || || ||| ||| | || || || || || ||||| || Sbjct 6820056 ACACCAATTCCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTGTCATATATT 6820115 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 ||||| ||||| ||||| |||| |||| ||| ||||| Sbjct 6820116 CCCTCAATACTGTCATCTTTCATACACAGTAAAAAGCAGCT 6820156 >seq2 Length=62769430 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 ||| || ||||| || | || |||||||| ||||| |||||| ||| ||| | | | Sbjct 29134728 AGTCCCAGCATTGAAAAGAGTGGGAGAAGCATGAGTGAACCATCTTTGAGACATCATGTG 29134669 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || | ||||| || || || || | ||||||||| || || || | |||||| Sbjct 29134668 ATAAGTTTTTATAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCAACCCTCATTAA 29134609 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||||||||| ||||| | | ||| | | |||||| | || || | |||| Sbjct 29134608 CATGTGCTGAGGCCTTTCTATAACCTTCCCTTGAACTTTCAAGAGATAAGACCTCTCCAG 29134549 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||||| || ||||| || | ||| |||||| || || || || || Sbjct 29134548 GGTTTTGAAGCCAAAGTAATCGTAGTCAAAGTCACGATCATATATGAT 29134501 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| ||||| | |||| ||| || | ||| | || | || |||||| | ||| || Sbjct 29135071 TCCTCCTTGATCAACATATCGAGCAGTATCATTGAACACCCGCAGCATTGGGACAATTCC 29135012 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| ||||||||||| || || ||||| || || |||| |||||||| || || Sbjct 29135011 ATTAGATGTACCATTTGTTCCACGAATATAACTACCTGTGGCTCGAATATTGTGAACAGA 29134952 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| ||||| || || ||| ||| | || || || || || ||||| || Sbjct 29134951 AACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATATAT 29134892 Query 63406 GCCCTCTATACTATCATCCATCATG 63430 || || ||||||||||| ||||| Sbjct 29134891 TCCTTCAATACTATCATCTTTCATG 29134867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633623810306400