Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq11 147 4e-30 seq10 95.1 2e-14 seq9 95.1 2e-14 seq8 93.3 9e-14 seq6 93.3 9e-14 seq4 93.3 9e-14 seq1 93.3 9e-14 >seq11 Length=62681010 Score = 147 bits (162), Expect = 4e-30 Identities = 207/291 (71%), Gaps = 0/291 (0%) Strand=Plus/Minus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577 |||||||| | ||||| || ||||| || || | ||| | | | || ||||| Sbjct 59272619 GACTTCATTAATAAGGAACTTATTCTGTTTTCCATGGCTGACCTTCAAAGATCAATTCCT 59272560 Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637 | |||| |||||||| ||||| || | |||||||| || || |||||| || Sbjct 59272559 TCCATGGTTGATGGCCTGAAGCCTGGTCAAAGGAAGATCCTTTTCTGTGCTTTCAAGAGG 59272500 Query 218638 AACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGC 218697 || | || || || ||||| |||| ||||| |||||||| || || ||||| Sbjct 59272499 AATTTTGTACATGAGGCAAAGGTTTCTCAATTTTCGGGTTATGTTTCGGAGCATTCTGCT 59272440 Query 218698 TACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTG 218757 |||||||| |||||||||||||| || ||||||| || ||||| ||||| | |||| Sbjct 59272439 TACCATCATGGTGAGCAGAGTCTTTGTAGTACCATTGTTGGAATGGCCCAGGATTTTGTG 59272380 Query 218758 GGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 |||||||||||||| ||| | || | || ||||| |||||| ||||| Sbjct 59272379 GGCAGTAACAACATAAACCTTCTCCGTCCTGGGGGTCAATTTGGTACTCGT 59272329 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 59161409 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 59161468 Query 142563 CCCCAC 142568 |||||| Sbjct 59161469 CCCCAC 59161474 >seq10 Length=62175169 Score = 95.1 bits (104), Expect = 2e-14 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| |||||||||||||||||||| || ||||||| || |||||||||||||||| Sbjct 3925504 TAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 3925445 Query 142562 GCCCCAC 142568 ||||||| Sbjct 3925444 GCCCCAC 3925438 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 2007136 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2007195 Query 142563 CCCCAC 142568 |||||| Sbjct 2007196 CCCCAC 2007201 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 3925661 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3925602 Query 142563 CCCCAC 142568 |||||| Sbjct 3925601 CCCCAC 3925596 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 56539839 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 56539780 Query 142563 CCCCAC 142568 |||||| Sbjct 56539779 CCCCAC 56539774 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 56546962 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 56546903 Query 142563 CCCCAC 142568 |||||| Sbjct 56546902 CCCCAC 56546897 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 3925352 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3925293 Query 142564 CCCAC 142568 ||||| Sbjct 3925292 CCCAC 3925288 >seq9 Length=70713020 Score = 95.1 bits (104), Expect = 2e-14 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| |||||||||||||||||||| || ||||||| || |||||||||||||||| Sbjct 17002922 TAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 17002981 Query 142562 GCCCCAC 142568 ||||||| Sbjct 17002982 GCCCCAC 17002988 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 10323166 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 10323107 Query 142563 CCCCAC 142568 |||||| Sbjct 10323106 CCCCAC 10323101 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 18872534 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 18872475 Query 142563 CCCCAC 142568 |||||| Sbjct 18872474 CCCCAC 18872469 >seq8 Length=57128820 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 52840815 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 52840756 Query 142563 CCCCAC 142568 |||||| Sbjct 52840755 CCCCAC 52840750 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || ||||| |||||||||||||||||||| || ||||||| || ||||||||||||||| Sbjct 43326681 ATTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 43326622 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 43326621 AGCCCCAC 43326614 >seq6 Length=51074515 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 43204916 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 43204857 Query 142563 CCCCAC 142568 |||||| Sbjct 43204856 CCCCAC 43204851 >seq4 Length=62178258 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 3504726 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3504667 Query 142563 CCCCAC 142568 |||||| Sbjct 3504666 CCCCAC 3504661 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 45239863 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 45239922 Query 142563 CCCCAC 142568 |||||| Sbjct 45239923 CCCCAC 45239928 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 53263385 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 53263326 Query 142564 CCCAC 142568 ||||| Sbjct 53263325 CCCAC 53263321 >seq1 Length=55868233 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 24654723 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 24654664 Query 142563 CCCCAC 142568 |||||| Sbjct 24654663 CCCCAC 24654658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027823183089594