Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq11 150 3e-31 seq1 93.3 8e-14 >seq11 Length=62681010 Score = 150 bits (166), Expect = 3e-31 Identities = 398/601 (66%), Gaps = 10/601 (2%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||| ||||||||||| || ||||||||| ||||||||| || |||||||| Sbjct 8941893 CTCGCCTTTTTCGCCGCCTCCGATGGCATAGTCCTTGAGAACCTTGCTGTTCGGTTCATG 8941952 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAGAA 42541 |||||||| ||| || |||||||| ||| || || || ||||| || || || || || Sbjct 8941953 AAAGAGGTCCAGATCTCCGAGGCGCG-TGCTTTTTATGGTTTCCAAATCGCTATCGAAAA 8942011 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 | ||||| ||| ||||| || ||| | || ||||| ||| ||| || Sbjct 8942012 TATCCACTCCGAGATGTACAGTCTCCTTCTCGAGACTTACATAAAAGATTCCGATGAAAA 8942071 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 ||| | || ||| ||||| |||||| |||| || | || || || || ||||| Sbjct 8942072 GAACCGTCTTTTCCGCGCCATCGAGACGGTGCCGTGTGTGGCTAAAAAAGCCGAGTGGGC 8942131 Query 42662 GCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 | || |||||||| | || | ||| |||| ||| || | | || ||| | Sbjct 8942132 TATGAAATGGATCGACGG---CGGAGAAACTTTCGCCGAACGGTTAATCGCTTTTGCTTG 8942188 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 ||| || || ||||| ||||| || ||| |||| || ||| | || ||| || Sbjct 8942189 CGTAGAAGGGATCTTTTTCTCCGGAAGTTTCTGTGCCATATTTTGGTTAAAAAAGAGGGG 8942248 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 || ||||||||| | || ||||| ||||| | ||| | || || || || || | Sbjct 8942249 GTTAATGCCCGGATTAACTTTCTCAAACGAGTTAATCTCACGAGATGAAGGTCTCCACTG 8942308 Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGT 42901 || || || ||| | |||| ||| | |||| || |||| | ||||| || Sbjct 8942309 CGATTTCGCTTGCTTGCTGTACTC---TCTCCTCCGGTCAAAGCTGAGTGAAGAGCGCGT 8942365 Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGC-AGTCGCTGC 42960 ||| || | | ||| || ||||| || |||| ||||||| | | || | | |||| Sbjct 8942366 GAGGGGGATAGTGAGGGACGCGGTGGACATAGAGAGGGAGTTCGT-ATGCGATGCTCTGC 8942424 Query 42961 CCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCG 43020 || | |||| || |||||| ||| | ||| | ||||||| ||| ||| || | Sbjct 8942425 CCTGCGCGTTGGTTGGGATGAACGGCGAGTTAATGAGTCGGTACATCGAGTTCGTGGCGG 8942484 Query 43021 A 43021 | Sbjct 8942485 A 8942485 >seq1 Length=55868233 Score = 93.3 bits (102), Expect = 8e-14 Identities = 289/444 (65%), Gaps = 5/444 (1%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || |||||||||||||| || || ||||| ||| || || || ||| | |||||| Sbjct 54862318 CTTGCCTTCTTCGCCGCATCCGATGGCATCGTCCTAGAAAATCTCGCCGTTCGCTTCATG 54862377 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAGAA 42541 |||||||| || | |||||||| ||| || || || ||||| || ||||| ||||| Sbjct 54862378 AAAGAGGTCCAAATCGCGGAGGCGCG-TGCATTTTATGGATTCCAAATCGCCATCGAGAA 54862436 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 | ||||||||| |||| || ||| | || || || ||| || ||| Sbjct 54862437 TATCCACTCTGAGATGTATAGTCTCCTCCTCGAAACTTATATTAAAGATTCCACCGAAAA 54862496 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 ||| | || ||| | || | || ||| |||| ||| | || || || || ||||| Sbjct 54862497 GAACCGCCTCTTCCACGCTACTGAAACGGTGCCGTGCGTGGCTAAAAAAGCCGATTGGGC 54862556 Query 42662 GCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 | || |||||||| | || || | | || | ||| || | | || || | Sbjct 54862557 TTTGAAATGGATCGACGG---CGGCGAAGCTTTTGCCGAACGGTTAATCGCTTTCGCTTG 54862613 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 ||| || ||||| || ||||| ||| ||| | || || ||| | || || | Sbjct 54862614 CGTAGAAGGCATATTTTTCTCCGGCAGTTTCTGTGCGATATTTTGGTTAAAAAAGCGCGG 54862673 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 || ||||| ||| || ||||| ||| | | ||| | || || || || ||| | Sbjct 54862674 GTTAATGCCTGGATAAACTTTCTCAAACAAGTTGATCTCTCGAGATGAAGGTCTCCATTG 54862733 Query 42842 GGACTTTGCCTGCCTCCTGTTCTC 42865 |||||||| ||| | |||| ||| Sbjct 54862734 CGACTTTGCTTGCTTGCTGTACTC 54862757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944326994415840