Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq8 82.4 6e-11 >seq8 Length=57128820 Score = 82.4 bits (90), Expect = 6e-11 Identities = 161/235 (69%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| || || || ||||| ||||| || ||| |||||||| |||||||| || || Sbjct 38526373 ACCTCCCCTAAGACGGAGCACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGC 38526314 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || |||| || | |||||||||||||| || |||||||| || || || Sbjct 38526313 TAAGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGTTGGTCGGGTGG 38526254 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACT---CACACTATCAGTAGATTC 34076 | || ||| |||| | | | || |||| || | | | | || | ||| || Sbjct 38526253 GATGCCCTCCTTGT-CTTGGATCTTGGCTT--TGACATTGTCGATGGTGTCGGAAGACTC 38526197 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || | ||||| || || || ||||| ||||| || ||||||||||| ||| Sbjct 38526196 AACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTGACGAAGATTTGCATCTTT 38526142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397057396269268