Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq1034 89.7 5e-13 seq13 89.7 5e-13 >seq1034 Length=160161 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 38782 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 38723 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 38722 CCCGTTCCCGCAAC 38709 >seq13 Length=58321163 Score = 89.7 bits (98), Expect = 5e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 92617 GGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAATCC 92676 ||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||||| Sbjct 52480021 GGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAATCC 52479962 Query 92677 CACTCCCGCCAC 92688 || |||||| || Sbjct 52479961 CATTCCCGCAAC 52479950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526591593715680