Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq6 167 2e-36 seq9 118 1e-21 seq11 116 3e-21 seq4 107 2e-18 seq2 107 2e-18 seq7 105 6e-18 seq10 98.7 9e-16 seq511 93.3 4e-14 seq12 84.2 2e-11 seq8 84.2 2e-11 >seq6 Length=51074515 Score = 167 bits (184), Expect = 2e-36 Identities = 177/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || |||||||| || || || || || ||||||||||||||||||||||| Sbjct 42745431 ATCCCTCCACGAAGCCTCAAAACAAGGTGAAGGGTGGATTCCTTTTGGATATTATAATCA 42745372 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| ||||||||||| || ||| | ||||| || || ||||| || Sbjct 42745371 GCCAAGGTCCTCCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGCTGTTGGTCAGGT 42745312 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || |||||||| || ||||||| | || | | | || | || | |||||||||| ||| Sbjct 42745311 GGGATGCCTTCCTTGTCTTGAA-TCTTGGCCTTAACGTTGTCGATGGTGTCGGAACTCTC 42745253 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||| || | || |||||||||| ||||| ||||| |||||||| Sbjct 42745252 GACTTCGAGGGTGATGGTCTTGCCGGTTAAGGTTTTGACAAAGATTTGCAT 42745202 >seq9 Length=70713020 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| ||||| || | | || || || || || |||||||| ||||||||||||||| Sbjct 65273867 ATTCCCCCGCGAAGACGGAGGACGAGGTGGAGGGTGGATTCCTTCTGGATATTATAATCG 65273808 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | ||||| || ||| | || | || |||||||| || Sbjct 65273807 GCCAGGGTACGGCCATCTTCGAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGT 65273748 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || |||||||| || ||||| ||||| |||| || | ||||||||| |||| Sbjct 65273747 GGGATGCCTTCCTTGTCTTGGATTTTAGACTTGACATTGTCGATGGTGTCGGAGCTCTCG 65273688 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| || | || |||||||||| ||||| || || || ||||| Sbjct 65273687 ACTTCGAGGGTGATGGTCTTGCCGGTTAAGGTTTTGACGAAGATCTGCAT 65273638 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || || || || || || |||||||| ||||| || |||||| Sbjct 65273411 ATACCCCCACGAAGACGTAAGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCG 65273352 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | |||||||| ||| | || | || |||||||| || Sbjct 65273351 GCCAAGGTACGGCCGTCCTCGAGCTGTTTTCCGGCGAAGATAAGACGCTGCTGGTCTGGT 65273292 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || |||||||| || ||||||||||| || | || | ||||||||| |||| Sbjct 65273291 GGGATGCCTTCCTTGTCTTGAATTTTAGACTTCACATTATCGATGGTGTCGGAGCTCTCG 65273232 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| || | || |||||||||| ||||| || || || ||||| Sbjct 65273231 ACTTCGAGGGTGATGGTCTTGCCGGTTAAGGTTTTGACGAAGATCTGCAT 65273182 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || |||||||| ||||| || |||||| | ||| || || Sbjct 65273618 ACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCGTCCTCG 65273559 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||| || ||| | || | || |||||||| || || |||||||| || |||||| Sbjct 65273558 AGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGA 65273499 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| || | || | |||||| || |||||||||||| || | || ||| Sbjct 65273498 ATTTTAGACTTTACATTATCGATGGTGTCAGAGCTCTCGACTTCGAGGGTGATGGTCTTG 65273439 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||| |||||| || || || ||||| Sbjct 65273438 CCGGTTAAAGTTTTGACGAAGATCTGCAT 65273410 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAAT-C 45169 ||||| || || || | || ||| | |||||| ||||| ||||||||||| ||||||| | Sbjct 66888190 ATTCCACCACGCAGTCGCAGCACCAAATGCAGGGTTGACTCCTTTTGGATGTTATAATCC 66888249 Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 ||| | || | ||| || | || ||||| || | |||| | ||||| || || Sbjct 66888250 GCT-AGTGTCCTCCCATCCTCGAGCTGCTTTCCGGCAAAAATCAGCCTCTGCTGATCTGG 66888308 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTC 45289 ||||| || || || || ||||| || || | || | ||| || ||| ||| Sbjct 66888309 TGGAATACCCTCCTTGTCCTGAATCTTGGCCTTAACATTATCAATGGTATCAGAACTCTC 66888368 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || | ||| | ||||| ||||| || ||||||||||| || |||||| Sbjct 66888369 CACCTCCAAAGTGATGGTTTTTCCGGTGAGGGTTTTTACAAATATCTGCATC 66888420 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || |||||||| ||||| || |||||| | ||| || || Sbjct 65273162 ACAAGGTGGAGGGTAGATTCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCGTCCTCG 65273103 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | |||||||| ||| | || | || |||||||| || || |||||||| || |||||| Sbjct 65273102 AGCTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGA 65273043 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| || | || | |||||| ||| ||| || ||||| || | || ||| Sbjct 65273042 ATTTTAGACTTCACATTGTCGATGGTGTCAGAACTCTCAACCTCGAGGGTGATGGTCTTG 65272983 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || ||||| || || || |||||| Sbjct 65272982 CCGGTAAGGGTTTTGACGAAGATCTGCATC 65272953 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | | ||| | || || || || || || |||||||||||||| Sbjct 66881580 ATCCCTCCTCGAAGTCGGAGCACCAAGTGGAGGGTAGACTCTTTCTGGATATTATAATCT 66881639 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || ||| || | ||||| || || | ||||| | ||||| || || Sbjct 66881640 GCAAGTGTCCTACCATCTTCGAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGATCTGGT 66881699 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| || || || || || ||| | || | |||||| ||| ||| Sbjct 66881700 GGAATCCCTTCCTTGTCCTGGATCTTAGCTTTTACATTGTCAATGGTGTCAGAACTCTCA 66881759 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||||| || || ||||| ||||| || |||||||||||||| Sbjct 66881760 ACTTCCAAAGTAATAGTCTTTCCGGTGAGAGTCTTCACAAAAATTTGCAT 66881809 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | || || | |||||| || |||||||||||||| ||||| || Sbjct 66881352 ATCCCTCCTCGAAGTCGTAAAACCAAATGCAGGGTCGATTCCTTTTGGATGTTATAGTCT 66881411 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | || ||||| || | ||||| | |||||||| || Sbjct 66881412 GCAAGTGTCCTCCCATCCTCAAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGA 66881471 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || || || |||||||| ||||| || | |||||| || |||| Sbjct 66881472 GGAATCCCCTCCTTGTCCTGAATTTTCGCTTTGACATTGTCAATGGTGTCCGAGCTCTCG 66881531 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || | ||||| ||||| | || || || || || |||||| Sbjct 66881532 ACCTCCAGGGTGATGGTTTTACCGGTCAAGGTCTTCACGAATATCTGCATC 66881582 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | ||||| | ||| || || |||||||| || || ||||| || Sbjct 66881808 ATGCCACCACGGAGACGTAACACCAAATGGAGGGTCGATTCCTTCTGAATGTTATAGTCC 66881867 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || ||||| || | ||||| | ||||||||||| Sbjct 66881868 GCAAGAGTTCGGCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCCGGT 66881927 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| ||||| ||||| || || | || | || || ||| ||| Sbjct 66881928 GGGATCCCTTCCTTATCCTGAATCTTGGCCTTAACATTATCAATCGTATCAGAACTCTCC 66881987 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || | |||| ||||| ||||| || |||||||||||||| |||||| Sbjct 66881988 ACCTCCAACGTAATAGTTTTTCCGGTGAGGGTTTTTACAAAAATCTGCATC 66882038 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | || || | ||||| ||||| ||||||||||| |||||||| Sbjct 66887962 ATCCCTCCTCGAAGGCGCAGAACCAAGTGCAGGGTTGACTCCTTTTGGATGTTATAATCC 66888021 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | ||| ||||| || | ||||| | |||||||| || Sbjct 66888022 GCAAGCGTCCTCCCATCCTCGAGTTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCAGGT 66888081 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || || ||||| || || || | || | || | ||||| ||| ||| Sbjct 66888082 GGGATACCCTCCTTGTCTTGGATCTTGGCCTTCA-CGTTATCAATTGTGTCTGAACTCTC 66888140 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | |||| ||||| || || | |||||| |||||||| ||||| Sbjct 66888141 CACCTCCAATGTAATAGTTTTTCCAGTCAAAGTTTTCACAAAAATCTGCAT 66888191 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||||||| || || || |||||||||||||| || ||| | ||| ||| || Sbjct 66882513 ACTAGATGGAGGGTGGACTCCTTTTGGATATTGTAGTCGGCAAGAGTTCGGCCATCCTCG 66882572 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||||||| || | || | | ||||||||| || || || |||||||| ||||| Sbjct 66882573 AGTTGTTTTCCGGCAAAGATAAGCCTTTGCTGGTCAGGAGGGATCCCTTCTTTGTCTTGG 66882632 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| |||| || | || || ||| || || || || || | || || Sbjct 66882633 ATTTTAGCCTTGACATTATCGATAGTATCAGAACTTTCTACCTCAAGGGTGATGGTCTTA 66882692 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || ||||| ||||| || |||||| Sbjct 66882693 CCAGTAAGGGTTTTCACAAAGATCTGCATC 66882722 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | || | ||| || | |||||| || |||||||||||||| ||||| || Sbjct 66887734 ATCCCTCCTCTAAGGCGCAAAACCAAATGCAGAGTGGATTCCTTTTGGATGTTATAGTCC 66887793 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | || ||||| || | ||||| | |||||||| || Sbjct 66887794 GCAAGCGTCCTCCCATCCTCAAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGA 66887853 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || || || |||||||| ||| | || | |||||| || |||| Sbjct 66887854 GGAATCCCCTCCTTGTCCTGAATTTTCGCTTTAACATTGTCAATGGTGTCCGAGCTCTCG 66887913 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || | ||||| || || | || || || || || |||||| Sbjct 66887914 ACCTCCAGTGTTATGGTTTTACCAGTCAAGGTCTTAACGAATATCTGCATC 66887964 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 ||||| || || || || ||||||||||| || || ||| | ||| ||| || Sbjct 66888667 ACTAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCAAGAGTTCGGCCATCCTCA 66888726 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||||||| || | || | | ||| ||||| || ||||| |||||||| ||||| Sbjct 66888727 AGTTGTTTTCCGGCAAAGATAAGCCTTTGTTGGTCTGGAGGAATCCCTTCTTTGTCTTGG 66888786 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| |||| || | || ||||| || || || || || | || || Sbjct 66888787 ATTTTGGCCTTGACATTATCGATAGTATCGGAGCTTTCTACCTCAAGGGTGATGGTCTTA 66888846 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || ||||| ||||| ||||||||| Sbjct 66888847 CCAGTAAGGGTTTTCACAAAGATTTGCATC 66888876 >seq11 Length=62681010 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || ||||| ||||||||||| || |||||| | ||| || || Sbjct 1163927 ACGAGGTGGAGAGTTGACTCCTTTTGGATGTTGTAATCGGCCAAGGTCCGGCCGTCTTCG 1163986 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | |||||||| ||| | |||| || |||||||| || || |||||||| |||||||| Sbjct 1163987 AGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCTTGG 1164046 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||||| || | || | || | |||||||| |||||| ||||| || | ||| || Sbjct 1164047 ATTTTGGCCTTCA-CGTTGTCGATCGTGTCGGAGCTCTCGACCTCGAGTGTGATCGTCTT 1164105 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||||||||||| || || || || |||||| Sbjct 1164106 GCCGGTTAGAGTCTTAACGAAGATCTGCATC 1164136 Score = 114 bits (126), Expect = 1e-20 Identities = 156/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || |||||||| |||||||| |||||| | || || || Sbjct 1163471 ACCAGATGAAGAGTCGATTCCTTCTGGATATTGTAATCGGCTAAAGTCCGCCCGTCCTCG 1163530 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||| ||||| ||| | || | ||||||||||| ||||| |||||||| || ||||| Sbjct 1163531 AGTTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGG 1163590 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||||| ||| | || | || | ||||| || |||||| |||||||| | ||| || Sbjct 1163591 ATTTTGGCTTTCA-CGTTGTCGATCGTGTCAGAGCTCTCGACCTCGAGAGTGATCGTCTT 1163649 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGC 45345 ||||| || || || || || ||||||||| ||| Sbjct 1163650 TCCGGTAAGCGTCTTAACGAAGATTTGCATCCCGC 1163684 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | || || || || || |||||||| |||||||| || ||| Sbjct 3842785 CCACCGCGGAGGCGGAGGACGAGGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGCT 3842844 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || || | || || || ||| | || | ||||| || || || || Sbjct 3842845 AAGGTGCGGCCGTCTTCAAGCTGCTTCCCGGCGAAGATAAGGCGTTGTTGATCGGGAGGG 3842904 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 |||||||| || ||||| || || ||||| || | |||||||||||||||||| Sbjct 3842905 ATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCGACC 3842964 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | ||||| || ||||| ||||| || || || |||||| Sbjct 3842965 TCAAGGGTTATGGTTTTCCCCGTTAGGGTTTTGACGAAGATCTGCATC 3843012 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || ||||| ||||| ||||| || || ||| | ||| || || Sbjct 1163699 ACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGGCCGTCTTCG 1163758 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||||||| ||| | || | ||||||||||| || || |||||||| || ||||| Sbjct 1163759 AGTTGTTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGG 1163818 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 | | || | | | || | || | |||||||| |||||| |||||||| | || || Sbjct 1163819 A-TCTTCGCCTTAACGTTGTCGATCGTGTCGGAGCTCTCGACCTCGAGAGTGATTGTCTT 1163877 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||||| | ||||| || || ||||||||| Sbjct 1163878 GCCGGTCAAGGTTTTCACGAAGATTTGCATC 1163908 >seq4 Length=62178258 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || |||||||||||||| || || ||| | ||| || || Sbjct 4510753 ACAAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGCTAAGGTGCGGCCGTCTTCG 4510694 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||| || || ||| | || | ||||| |||||||| || ||||||||||| ||||| Sbjct 4510693 AGTTGCTTACCGGCGAAGATGAGGCGTTGTTGGTCCGGGGGTATGCCTTCTTTGTCTTGG 4510634 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || ||||| || | ||||||||||||||||| || || || | || || Sbjct 4510633 ATCTTGGCTTTGACATTATCGATTGTGTCGGAAGACTCGACCTCTAGGGTTATGGTCTTC 4510574 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| ||||| || || || ||||| Sbjct 4510573 CCGGTTAGGGTTTTCACGAAGATCTGCAT 4510545 >seq2 Length=62769430 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || || || ||||| ||||||||||||||| | ||| | ||| || | ||| Sbjct 27609663 ATGGAGAGTAGACTCCTTCTGGATATTATAATCGGCAAGAGTTCTTCCATCTTCAAGTTG 27609604 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 |||||| || | ||||||| ||| ||||| || || || |||||||| || ||||| || Sbjct 27609603 TTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATTCCTTCTTTGTCCTGAATCTT 27609544 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||| | || | ||| || ||| |||||| || | || | || || || || Sbjct 27609543 GGCTTTCACATTATCAATGGTATCCGAACTCTCGACCTCCAAGGTGATTGTCTTTCCAGT 27609484 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| ||||| |||||||| Sbjct 27609483 GAGAGTTTTGACAAAGATTTGCAT 27609460 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | || |||||||| || || |||||||||||||||||||| Sbjct 27610142 CCACCGCGAAGGCGAAGGACAAGATGCAGAGTAGACTCCTTTTGGATATTATAATCAGCC 27610083 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| || | ||| || || || |||| | | ||||||||| || || Sbjct 27610082 AATGTCCTGCCATCTTCAAGTTGCTTGCCAGCAAATATGAGCCTTTGCTGGTCTGGTGGG 27610023 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| || |||||||| ||| || | || | |||||| ||| || || Sbjct 27610022 ATCCCTTCCTTGTCTTGAATCTTTGCCTTAACATTGTCAATGGTGTCTGAACTTTCAACC 27609963 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| | || || || || ||||| || ||||| || |||||| Sbjct 27609962 TCTAGAGTGATAGTCTTTCCAGTAAGAGTCTTAACAAAGATCTGCATC 27609915 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCT 45172 || || ||||| | | || |||||||| || || ||||| |||||||| || || ||| Sbjct 10572344 CCACCACGGAGGCGAAGGACAAGATGCAGAGTAGACTCCTTCTGGATATTGTAGTCAGCT 10572285 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | ||| | || ||||| || || || || | ||||| | ||||| ||||| || Sbjct 10572284 -AGAGTTCGACCGTCCTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGGGG 10572226 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292 ||| || || || || ||||| ||| ||| | || | || || ||| ||| || Sbjct 10572225 AATTCCCTCCTTGTCCTGAATCTTTGCTTTTACATTGTCAATCGTATCAGAACTCTCAAC 10572166 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| | |||| || || || || || || || |||||||||||||| Sbjct 10572165 TTCCAAGGTAATAGTCTTTCCTGTGAGGGTCTTCACAAAAATTTGCAT 10572118 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| || || | | ||| | ||| || || || ||||||||||| || ||||| Sbjct 10549622 ATTCCTCCACGAAGGCGGAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCA 10549563 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | ||| || || || | || | || |||||||| || Sbjct 10549562 GCCAGGGTACGGCCATCTTCTAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGA 10549503 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||| ||||| || || |||| || | |||||| || || Sbjct 10549502 GGGATCCCTTCTTTGTCTTGGATCTTGGCCTTGACATTATCAATGGTGTCCGAGCTTTCC 10549443 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || |||||||| || || || ||||| |||||||| Sbjct 10549442 ACCTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTAACAAAGATTTGCAT 10549393 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || |||| |||||| | || || || || |||||||||||||| || ||| Sbjct 27609917 ATCCCACCACGCAGCCGCAACACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCG 27609858 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || ||| || | || || || || | || | | ||||||||| || Sbjct 27609857 GCCAATGTCCTACCATCTTCGAGCTGCTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGG 27609798 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || || ||||| || ||| || | || | ||| |||||| || Sbjct 27609797 GGGATACCCTCCTTGTCTTGGATCTTTGCCTTCACATTGTCAATGGTATCGGAACTTTCA 27609738 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| | || || ||||| ||||| |||||||| || ||||| Sbjct 27609737 ACCTCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTTACAAAGATCTGCAT 27609688 >seq7 Length=60982465 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| | ||| | | || || || || || |||||||| ||||| || || ||| Sbjct 9403978 CCTCCCCTGAGACGGAGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGCT 9403919 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| || | ||| || || ||| | || | ||||| ||||| || ||| Sbjct 9403918 AAGGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATAAGACGTTGTTGGTCAGGTGGA 9403859 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 |||||||| || ||||| || || ||||| || | |||||||||||||||||| Sbjct 9403858 ATGCCTTCCTTGTCTTGGATCTTAGCTTTGACATTGTCAATGGTGTCGGAAGACTCGACC 9403799 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | || || || ||||| ||||| || || || |||||| Sbjct 9403798 TCTAGGGTTATAGTCTTCCCCGTTAGGGTTTTGACGAAGATCTGCATC 9403751 >seq10 Length=62175169 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || || ||||| ||||| || |||||| | ||| ||| || Sbjct 51860885 ACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCCAAGGTCCGGCCATCTTCG 51860826 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | |||||||| ||| | || | ||||| ||||| || || || ||||| || ||||| Sbjct 51860825 AGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGG 51860766 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||||| || | || | || | ||||||||| |||||||||||| || | || || Sbjct 51860765 ATTTTCGCCTTAA-CGTTGTCGATCGTGTCGGAACTCTCGACTTCGAGGGTGATGGTCTT 51860707 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||||| || || || || || || |||||| Sbjct 51860706 GCCGGTCAGGGTCTTAACGAAGATCTGCATC 51860676 >seq511 Length=6087 Score = 93.3 bits (102), Expect = 4e-14 Identities = 106/140 (76%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-G 45170 ||||||| | ||||| |||||||| || || || || ||||||||||| |||||||| | Sbjct 483 TTCCTCCCCTAAGCCTTAACACTAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAG 424 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | |||| ||| |||| ||| || || || | ||||| | ||||| || || Sbjct 423 CT-AGGGTTCGGCCATCTTCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGATCAGGA 365 Query 45231 GGAATGCCTTCTTTATCTTG 45250 || |||||||||||||| || Sbjct 364 GGGATGCCTTCTTTATCCTG 345 >seq12 Length=35429946 Score = 84.2 bits (92), Expect = 2e-11 Identities = 104/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-G 45170 ||||||| | ||||| |||||||| || || || || ||||||||||| |||||||| | Sbjct 4807174 TTCCTCCCCTAAGCCTTAACACTAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAG 4807233 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | |||| ||| || | ||| || || || | ||||| | ||||| || || Sbjct 4807234 CT-AGGGTTCGGCCATCTTCTAGTTGCTTACCAGCAAAAATCAACCTCTGCTGATCAGGA 4807292 Query 45231 GGAATGCCTTCTTTATCTTG 45250 || ||||| |||||||| || Sbjct 4807293 GGGATGCCCTCTTTATCCTG 4807312 >seq8 Length=57128820 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| ||||| || || |||||||| ||||| || || ||| | ||| || || Sbjct 38526355 CACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGGCCGTCCTC 38526296 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | || || || || | || | || || ||||| || || ||||| || || ||||| Sbjct 38526295 GAGCTGCTTGCCGGCAAAGATGAGGCGCTGTTGGTCGGGTGGGATGCCCTCCTTGTCTTG 38526236 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || ||||| || | ||||||||||||||| || || || || | || || Sbjct 38526235 GATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATGGTCTT 38526176 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| ||||| || || ||||||||| Sbjct 38526175 CCCCGTTAGGGTTTTGACGAAGATTTGCATC 38526145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451997357858640