Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_013059.1 Length=40975 Score E Sequences producing significant alignments: (Bits) Value seq2 118 3e-22 >seq2 Length=62769430 Score = 118 bits (130), Expect = 3e-22 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 30049 ATCACCCGAATATCTCATCAGGCCATTGGCTGGCTACAACCTTACCTACAACCCTGCATT 30108 |||| || || |||| |||||||| || || || | ||| || || ||||| || Sbjct 60927458 ATCAGCCAAACGTCTCTTCAGGCCACTGACTAGCGATAACTTTCCCCACAACGGAACAAC 60927517 Query 30109 GTTCGTTACATGGCATTATTGGGAACTGAGGGTTTAGCGGTTGTAGGAATACTTGTCCGC 30168 || || ||||| || |||||| |||| |||||||| ||||||| || || || |||| Sbjct 60927518 TCTCATTGCATGGGATCATTGGGTACTGTGGGTTTAGTGGTTGTAAAAACACCTGACCGC 60927577 Query 30169 TGTCTTTGATGAGCTTCTTAAAAGTGAACTCATCACCACATAACCTTGCAATGCAAAAAT 30228 | || |||| || ||||| || || ||||||||||| | | || || ||||| |||| Sbjct 60927578 TATCCCTGATCAGTTTCTTGAAGGTAAACTCATCACCCCCAAGTCTGGCTATGCAGAAAT 60927637 Query 30229 CGCCTGGGTCTACAG 30243 | ||||| || |||| Sbjct 60927638 CACCTGGCTCAACAG 60927652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130996791503396