Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq11 107 1e-18 seq10 96.9 2e-15 seq6 87.8 1e-12 seq9 84.2 2e-11 >seq11 Length=62681010 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || || | || | |||| || ||||| ||||| ||||| ||| Sbjct 1163225 CCACCACGAAGACGAAGAACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAATCAGCC 1163284 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| | | |||| |||| |||||||| ||||||| || | |||||||| | || Sbjct 1163285 AAAGTCCTTCCATCTTCCAGCTGTTTCCCAGCAAAAATCAACCTTTGCTGATCTGGTGGA 1163344 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| || || ||| | | | | || || | ||| ||||| Sbjct 1163345 ATTCCTTCTTTGTCCTGAATCTTCGCTTTCACGTTATCAATCGTATCCGAGCTCTCCACT 1163404 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||||||| || ||||| || ||||| || |||||||||||||| Sbjct 1163405 TCTAAAGTAATCGTCTTACCGGTCAAAGTCTTGACGAAGATCTGCAT 1163451 >seq10 Length=62175169 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| || | || | |||| ||| || || ||||| ||||| ||| Sbjct 51861359 CCACCACGAAGACGCAAGACAAGGTGGAGAGTGGATTCCTTCTGAATATTGTAATCAGCC 51861300 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| | | |||| ||||| |||||||| | ||||| || | |||||||| | || Sbjct 51861299 AAAGTCCTTCCATCTTCCAACTGTTTCCCAGCGAAAATCAACCTTTGCTGATCTGGTGGA 51861240 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||||||||| || || ||| || |||| | || || | || |||| Sbjct 51861239 ATCCCTTCTTTGTCCTGAATCTTCGCCTTAACATTGTCG--ATCGTATCGGAACTCTCCA 51861182 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||||||| || ||||| || || || || || ||||| |||||||| Sbjct 51861181 CCTCCAAAGTTATGGTTTTCCCAGTCAACGTCTTGACGAAAATCTGCAT 51861133 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 39507 CAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATC 39566 || ||||||||| | || || || || || || ||||||||||| ||| | || Sbjct 51861117 CAATACCAAATGGAGGGTCGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGACCGTC 51861058 Query 39567 GTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC 39626 || | |||||||||| |||| || | | ||||| || | || | |||||| ||||| Sbjct 51861057 CTCGAGTTGTTTCCCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATGCCTTCCTTGTC 51860998 Query 39627 GCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCACGTCCAAAGTAATTG 39685 || || || | ||| | | || |||| | |||||| || |||||||| || | Sbjct 51860997 TTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCAGAGCTTTCGACTTCCAAAGTTATGG 51860939 Query 39686 TTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | || || || | ||||| ||||||||||||||| Sbjct 51860938 TCTTGCCGGTCAGGGTTTTGACGAAGATCTGCATG 51860904 >seq6 Length=51074515 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| || || |||||||| |||||| | |||| ||||||||||| ||| |||| Sbjct 42745620 TCTTTCTGAATGTTATAATCAGCCAAAGTCCTCCCATCTTCCAATTGTTTGCCGGCAAAG 42745561 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | | |||||||| | || | ||||| || || || ||| |||| | Sbjct 42745560 ATGAGCCTTTGCTGATCAGGTGGGATTCCTTCCTTATCCTGAATCTTTGCCTTAACATTG 42745501 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | || || | |||||| || ||||| || |||||||| || || ||||| || || Sbjct 42745500 TCAATGGTATCGGAGCTTTCAACCTCCAAGGTGATTGTTTTGCCGGTCAAAGTCTTGACA 42745441 Query 39709 AAGATCTGCAT 39719 || |||||||| Sbjct 42745440 AAAATCTGCAT 42745430 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||| ||||| ||||||||||| ||||| | |||| ||||||||||| || | || Sbjct 42745393 TTCCTTTTGGATATTATAATCAGCCAAGGTCCTCCCATCTTCCAATTGTTTGCCAGCGAA 42745334 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 || |||||||| || || | || | |||||| ||||| || || |||| ||| Sbjct 42745333 GATCAAACGCTGTTGGTCAGGTGGGATGCCTTCCTTGTCTTGAATCTTGGCCTTAA-CGT 42745275 Query 39648 CG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 | | | ||||| | || || || || | || || || || || ||||| ||||| | Sbjct 42745274 TGTCGATGGTGTCGGAACTCTCGACTTCGAGGGTGATGGTCTTGCCGGTTAAGGTTTTGA 42745215 Query 39707 CGAAGATCTGCATG 39720 | ||||| |||||| Sbjct 42745214 CAAAGATTTGCATG 42745201 >seq9 Length=70713020 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||| || || |||||||||||||||| || |||| || | ||||| ||| | || Sbjct 65273829 TTCCTTCTGGATATTATAATCGGCCAGGGTACGGCCATCTTCGAGCTGTTTGCCGGCGAA 65273770 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTT--AATC 39645 || | ||||||||| || | || | |||||| ||||| ||||| || || Sbjct 65273769 GATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATTTTAGACTTGACATT 65273710 Query 39646 GTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTT 39705 |||| | ||||| | ||| || || || | || || || || || ||||| ||||| Sbjct 65273709 GTCG--ATGGTGTCGGAGCTCTCGACTTCGAGGGTGATGGTCTTGCCGGTTAAGGTTTTG 65273652 Query 39706 ACGAAGATCTGCAT 39719 |||||||||||||| Sbjct 65273651 ACGAAGATCTGCAT 65273638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347365222491722