Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2 136 5e-27 seq12 95.1 2e-14 >seq2 Length=62769430 Score = 136 bits (150), Expect = 5e-27 Identities = 255/368 (69%), Gaps = 10/368 (3%) Strand=Plus/Plus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 |||||| || ||||| | | | ||| |||||| || ||| | | || ||||| || Sbjct 1667938 ATCAAACCGTCCTGGCCTCAACAAAGCGGAATCAAGAATGTCAGCTCTGTTAGTTGCTGC 1667997 Query 15947 GATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGGTT 16003 || || | ||||| || |||| || ||||||||||| || |||||||||||||| Sbjct 1667998 AATTACGATGATACCGGT---GTTACCCTCGAAACCATCCATTTCGGTCAAAAGCTGGTT 1668054 Query 16004 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCAC 16063 || |||||| || | ||||||||| || | ||||| | | ||| ||| || Sbjct 1668055 AAGAGTTTGCTCTCTCTCATCATTCCCTCCACCAATACCAGTTCCTCTTTGTCGTCCAAC 1668114 Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTCAAAGA 16122 ||||||||| ||||| | ||||| || || || ||| | | | | ||| ||| | Sbjct 1668115 GGCATCAATTTCATCCACAAAGACAATACAGGGGGCATTCTCCTTGGCCTTCTTGAAA-A 1668173 Query 16123 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 16182 |||| || || || || || |||||||||||||| || ||||| | | ||||| Sbjct 1668174 GATCACGAACTCGAGAAGCACCAACACCAACAAACATTTCAACAAACTCAGAACCGGAA- 1668232 Query 16183 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 16241 || | || ||| || ||| || |||||| ||||| || || ||||||||||| || Sbjct 1668233 ATGGAGAAGAATGGCACACCAGCTTCACCGGCAATTGCCTTAGCAAGAAGAGTCTTTCCG 1668292 Query 16242 GTACCTGG 16249 || || || Sbjct 1668293 GTTCCAGG 1668300 >seq12 Length=35429946 Score = 95.1 bits (104), Expect = 2e-14 Identities = 328/501 (65%), Gaps = 18/501 (4%) Strand=Plus/Minus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 |||||| | || || | ||| | ||| ||| || || ||| | ||| || || || Sbjct 7032962 ATCAAATCTTCCAGGCCTAAGCAACGCAGAATCCAGAATTTCAGGCCTATTAGTAGCAGC 7032903 Query 15947 GATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAAT 16006 ||||||| || || || | | |||||||||||| || ||||| ||||| || | Sbjct 7032902 AATGACAATAACTCCAGTATTACCAGTAAAACCATCCATTTCAGTCAACAGCTGATTCAA 7032843 Query 16007 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCCAC 16063 |||||| |||| |||||||||| || |||| |||| | | || |||| || Sbjct 7032842 AGTTTGCTCCCTTTCATCATTCCCT---CCACCAATCCCAGTTCCTCTCTGTCTTCCAAC 7032786 Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--TCAAAG 16121 |||||||||||||| ||||| || | ||||| | || || | || | ||| Sbjct 7032785 AGCATCAATCTCATCGATGAACACCAAACATGG--GGAGTTAGCCTTTGCCTTGTTAAAC 7032728 Query 16122 AGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 16179 || |||| || || || | || || || || ||||||||||| | || | || | | Sbjct 7032727 AGGTCCC-TA-ACTCTGGAAGCTCCAACGCCTACAAACATCTCGATGAACTCTGAACCAG 7032670 Query 16180 AACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 16239 || | ||| || || | ||| || |||||||| ||| || | ||||||| Sbjct 7032669 AAAGGGAAAAGAAAGGAACCCCTGCTTCCCCTGCAATGGCCTTGGCCAGCAATGTCTTAC 7032610 Query 16240 CCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCC--AAA 16297 | || ||||| || || || | ||| ||||| |||| ||| || | || Sbjct 7032609 CAGTCCCTGGAGGTCCAATTAGAAGCACTCCTTTGGGAATTGTGGCACCAATTGCTGCAA 7032550 Query 16298 GTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCGGCGTC 16357 | | ||| |||| ||||| || ||||| | ||||| || || | ||||| | || Sbjct 7032549 ATTTTTCTGGGGTT-TTTAAG-AACTCCACTACCTCTTGAAAATCTTTCTTGGCTTCATC 7032492 Query 16358 AATCCCCTCAACATCGGTAAA 16378 ||| || | |||||| |||| Sbjct 7032491 AATACCAGCTACATCGTTAAA 7032471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620734376904480