Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2 145 9e-30 seq12 96.9 4e-15 seq3 96.9 4e-15 >seq2 Length=62769430 Score = 145 bits (160), Expect = 9e-30 Identities = 252/364 (69%), Gaps = 2/364 (1%) Strand=Plus/Plus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| || ||||| | | | ||| |||||| || ||| | | || || || || Sbjct 1667938 ATCAAACCGTCCTGGCCTCAACAAAGCGGAATCAAGAATGTCAGCTCTGTTAGTTGCTGC 1667997 Query 9254 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9313 || || | ||||| || | | || ||||||||||| || |||||||| ||||||| Sbjct 1667998 AATTACGATGATACCGGTGTTACCCTCGAAACCATCCATTTCGGTCAAAAGCTGGTTAAG 1668057 Query 9314 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGC 9373 |||||| || | ||||||||| || | ||||| | | ||| ||| ||||| Sbjct 1668058 AGTTTGCTCTCTCTCATCATTCCCTCCACCAATACCAGTTCCTCTTTGTCGTCCAACGGC 1668117 Query 9374 ATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATC 9433 |||||| ||||| | ||||||||||| || ||| || ||| | | || ||||| Sbjct 1668118 ATCAATTTCATCCACAAAGACAATACAGGGGGCATTCTCCTTGGCCTTCTTGAAAAGATC 1668177 Query 9434 GCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG 9493 ||||| | || || |||||||||||||| || ||||| | | ||||| || | Sbjct 1668178 ACGAACTCGAGAAGCACCAACACCAACAAACATTTCAACAAACTCAGAACCGGAA-ATGG 1668236 Query 9494 -GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTAC 9552 || ||| || ||| || |||||| ||||| || || ||||||||||| || || | Sbjct 1668237 AGAAGAATGGCACACCAGCTTCACCGGCAATTGCCTTAGCAAGAAGAGTCTTTCCGGTTC 1668296 Query 9553 CTGG 9556 | || Sbjct 1668297 CAGG 1668300 >seq12 Length=35429946 Score = 96.9 bits (106), Expect = 4e-15 Identities = 324/499 (65%), Gaps = 14/499 (3%) Strand=Plus/Minus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| | || || | ||| | ||| ||| || || ||| | ||| || || || Sbjct 7032962 ATCAAATCTTCCAGGCCTAAGCAACGCAGAATCCAGAATTTCAGGCCTATTAGTAGCAGC 7032903 Query 9254 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9313 ||||||| || || || | | | |||||||||||| || ||||| || || || | Sbjct 7032902 AATGACAATAACTCCAGTATTACCAGTAAAACCATCCATTTCAGTCAACAGCTGATTCAA 7032843 Query 9314 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCCAC 9370 |||||| |||| |||||||||| || |||| |||| | | || |||| || Sbjct 7032842 AGTTTGCTCCCTTTCATCATTCCCT---CCACCAATCCCAGTTCCTCTCTGTCTTCCAAC 7032786 Query 9371 GGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 9430 |||||||||||||| ||||| || | |||||| || | || | | ||| || Sbjct 7032785 AGCATCAATCTCATCGATGAACACCAAACATGGGGAGTTAGCCTTTGCCTTGTTAAACAG 7032726 Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 9490 || | ||| || || || || || ||||||||||| | || | || | ||| Sbjct 7032725 GTCCCTAACTCTGGAAGCTCCAACGCCTACAAACATCTCGATGAACTCTGAACCAGAAAG 7032666 Query 9491 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9550 | ||| || || | ||| || |||||||| ||| || | |||||||| || Sbjct 7032665 GGAAAAGAAAGGAACCCCTGCTTCCCCTGCAATGGCCTTGGCCAGCAATGTCTTACCAGT 7032606 Query 9551 ACCTGGCTTACCCGCGAGGAGGGCACCCCGT--GGAATCTTGGCGCCACTTCC--AAAGT 9606 ||||| || || | |||| || | ||||| |||| ||| || | || | Sbjct 7032605 CCCTGGAGGTCCAATTAGAA--GCACTCCTTTGGGAATTGTGGCACCAATTGCTGCAAAT 7032548 Query 9607 ATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCGGCGTCAA 9666 | ||| |||| || | || ||||| | ||||| || || | ||||| | |||| Sbjct 7032547 TTTTCTGGGGTT--TTTAAGAACTCCACTACCTCTTGAAAATCTTTCTTGGCTTCATCAA 7032490 Query 9667 TCCCCTCAACATCGGTAAA 9685 | || | |||||| |||| Sbjct 7032489 TACCAGCTACATCGTTAAA 7032471 >seq3 Length=45765648 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || ||||| || ||||||||||| || || || | || ||| | ||| | ||| Sbjct 6820268 TGAGGCCTTGGAGTTCCAGCATTGAAAAGTGTGGGAGAAGCATGAGTAAACCATCTTTGA 6820327 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| ||| || || | | ||||||||||||| | | || || || | || Sbjct 6820328 GACATCATGTGATAAGTTTTTATAGCAGAATCAATGTCATTCTTATGAATTCCAACTGCA 6820387 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--T 107345 || | ||| ||||||| |||||| |||| || | | || | || | || |||| | Sbjct 6820388 ACCCTCATTAACATGTGTTGGGGCCTTTCTAT-AACCTTCCCTTGA-ACTTTCAAGAGGT 6820445 Query 107346 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 || | ||||||||||||||| |||||| ||| || | ||| ||||||| Sbjct 6820446 AGGACCTCTCAAGGGTTTTGAAACCAAAATAATCATAGTCAAAGTCCCG 6820494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589973174498160