Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2 105 4e-18 seq9 104 2e-17 seq13 98.7 6e-16 seq6 96.9 2e-15 seq10 89.7 3e-13 seq1 86.0 4e-12 seq8 82.4 5e-11 >seq2 Length=62769430 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || |||||||||||||| | |||| ||| |||| || |||||||| || ||||| Sbjct 10572080 TCCTTTTGAATGTTATAGTCTGCAAGGGTTCTGCCATCTTCAAGCTGTTTCCCAGCAAAA 10572021 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 |||| | ||||||||| | || | ||||||||||| |||||| || ||| Sbjct 10572020 ATTAACCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTAACGTTA 10571961 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| ||| || || | || ||||||||||| ||||| || || ||| Sbjct 10571960 TCAATTGTATCAGAACTCTCCACCTCTAAAGTGATGGTTTTTCCAGTGAGCGTTTTTACA 10571901 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 10571900 AAGATCTGCAT 10571890 >seq9 Length=70713020 Score = 104 bits (114), Expect = 2e-17 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| || | | ||||||||| || | ||| ||| || || ||||||||||||| | Sbjct 66887737 CCTCCTCTAAGGCGCAAAACCAAATGCAGAGTGGATTCCTTTTGGATGTTATAGTCCGCA 66887796 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | | |||| || ||||| ||||||||||| || | | ||||||||| | || Sbjct 66887797 AGCGTCCTCCCATCCTCAAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGAGGA 66887856 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-CTC 34930 | |||||||||||| ||| ||| ||| || || | || || | ||| || ||| Sbjct 66887857 ATCCCCTCCTTGTCCTGAATTTTCGCTTTAAC--AT--TGTCAATGGTGTCCGAGCTCTC 66887912 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | ||||||||||| || || | ||||| || || |||||||| Sbjct 66887913 GACCTCCAGTGTTATGGTTTTACCAGTCAAGGTCTTAACGAATATCTGCAT 66887963 Score = 100 bits (110), Expect = 2e-16 Identities = 155/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCA 34829 |||||||| || | || ||| || || ||||||||||| | ||| | | |||| Sbjct 66881370 AAAACCAAATGCAGGGTCGATTCCTTTTGGATGTTATAGTCTGCAAGTGTCCTCCCATCC 66881429 Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889 || ||||| ||||||||||| || | | ||||||||| | || | |||||||||||| Sbjct 66881430 TCAAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTGTCC 66881489 Query 34890 CTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTAT 34945 ||| ||| |||||| || | || || | ||| || ||| || || | ||| || Sbjct 66881490 TGAATTTTCGCTTTGAC--AT--TGTCAATGGTGTCCGAGCTCTCGACCTCCAGGGTGAT 66881545 Query 34946 GGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||| || || | |||||||| || |||||||| Sbjct 66881546 GGTTTTACCGGTCAAGGTCTTCACGAATATCTGCAT 66881581 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||||||||||| ||| |||| |||| || ||||| ||||| ||||| Sbjct 66881846 TTCCTTCTGAATGTTATAGTCCGCAAGAGTTCGGCCATCTTCAAGCTGCTTTCCAGCAAA 66881905 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | | |||||||| | || | ||| ||||| || |||||| || || Sbjct 66881906 AATCAACCTCTGCTGGTCCGGTGGGATCCCTTCCTTATCCTGAATCTTGGCCTTAACATT 66881965 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | |||| ||| ||| || || | || || |||||||| ||||| || || || Sbjct 66881966 ATCAATCGTATCAGAACTCTCCACCTCCAACGTAATAGTTTTTCCGGTGAGGGTTTTTAC 66882025 Query 34970 AAAGATCTGCAT 34981 ||| |||||||| Sbjct 66882026 AAAAATCTGCAT 66882037 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| | | ||||||||| | ||||| || ||| ||||| |||||||| || | Sbjct 65274092 CCTCCACGAAGCCTCAAAACAAGGTGAAGGGTCGATTCCTTCTGGATGTTATAATCAGCC 65274033 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | | | |||| || ||||| || || ||||| || | ||||| |||||| |||| Sbjct 65274032 AAGGTCCTCCCATCCTCAAGCTGCTTCCCTGCAAAGATCAAACGTTGTTGGTCTGGCGGG 65273973 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCGGCCTCAA 34932 | ||| |||||||| ||||||| || || || | ||||| | ||| ||| Sbjct 65273972 ATCCCTTCCTTGTCCTGAATCTTCGCCTTTAC--AT--TGTCGATGGTGTCCGAACTCTC 65273917 Query 34933 CA--TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | ||| ||||| || || || | || ||||| ||||||||||| Sbjct 65273916 CACCTCCAAGGTGATGGTCTTGCCGGTCAAGGTTTTCACGAAGATCTGCAT 65273866 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || ||||| | || |||| |||| |||| ||| || || |||||| Sbjct 66881163 TCCTTCTGGATATTGTAGTCGGCTAGAGTTCGACCATCCTCCAACTGCTTCCCAGCAAAT 66881222 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | ||||||||| | || | |||||||||||| ||||||| ||| || Sbjct 66881223 ATCAACCTCTGCTGGTCTGGTGGAATCCCCTCCTTGTCCTGAATCTTCGCTTTCACATTG 66881282 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | ||| || || | ||| || ||||| || || | |||||||| Sbjct 66881283 TCGATCGTGTCTGAGCTCTCCACCTCCAGGGTGATTGTTTTCCCGGTCAAGGTCTTCACG 66881342 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 66881343 AATATCTGCAT 66881353 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAA 34848 || ||||| || || ||||| | |||| |||| |||| |||| ||| || || |||| Sbjct 66887545 TCCTTCTGGATATTGTAGTCTGCTAAAG--TTCGACCATCCTCCAACTGCTTCCCAGCAA 66887602 Query 34849 ATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGG 34908 | || | | ||||||||| | || | |||||||||||| |||||| ||| || Sbjct 66887603 AGATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTGTCCTGAATCTTAGCTTTCACAT 66887662 Query 34909 ATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 | |||| || | ||| || || | ||| |||||||| || || | |||||||| Sbjct 66887663 TGTCAATCGTGTCCGAGCTCTCCACCTCCAGGGTGATGGTTTTCCCAGTCAAAGTCTTCA 66887722 Query 34969 CAAAGATCTGCAT 34981 | || |||||||| Sbjct 66887723 CGAATATCTGCAT 66887735 >seq13 Length=58321163 Score = 98.7 bits (108), Expect = 6e-16 Identities = 152/215 (71%), Gaps = 8/215 (4%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | ||| || ||||| ||||| || || | |||| | | |||| || Sbjct 44436967 AACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCTGCAAGGGTCCTCCCATCCTC 44437026 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| ||||| |||||||| || | ||||||||| | || | || ||||| || Sbjct 44437027 TAGCTGCTTTCCAGCAAATATCAGCCTCTGCTGGTCTGGAGGGATACCTTCCTTATCTTG 44437086 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATT----CACCGGCCTCAACATCGACGGTTATGG 34947 ||| || || || || |||||||| || | |||||| || | ||| |||| Sbjct 44437087 AATTTTGGCCTTAAC--AT--TATCGATTGTGTCAGAGCTCTCAACTTCCAGGGTGATGG 44437142 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || || || ||||||||||| ||||||||| Sbjct 44437143 TCTTCCCGGTAAGTGTCTTCACAAAAATCTGCATA 44437177 Score = 93.3 bits (102), Expect = 3e-14 Identities = 164/234 (70%), Gaps = 14/234 (6%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||||||| | | ||||| || | |||| ||| ||||| ||||| ||||| | | Sbjct 44437862 CCACCCCTCAATCGGAGGACCAAATGGAGTGTGGATTCCTTCTGGATGTTGTAGTCAGCA 44437921 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| ||||||||||| || ||||| || || | || |||||| | || Sbjct 44437922 AGGGTACGGCCATCCTCCAGCTGTTTACCAGCAAAGATAAGCCTCTGTTGGTCTGGTGGG 44437981 Query 34875 ACCCCCTCCTTGTCGCTAATCT---TCTGT---TTGACGGATGCTATC-GATTCACCGGC 34927 | ||| |||||||| |||| ||| | ||| | |||| |||| || || Sbjct 44437982 ATCCCTTCCTTGTCTTGGATCTTGGTCTTTACATTGTC-GATGGTATCAGA---AC---T 44438034 Query 34928 CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || | ||| ||||| || || ||||| ||||| || || || ||||| Sbjct 44438035 TTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATTTGCAT 44438088 >seq6 Length=51074515 Score = 96.9 bits (106), Expect = 2e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| |||||||| || | |||| | || | || || |||||||| || || || Sbjct 42745165 TTCTTTCTGGATGTTATAATCGGCAAGGGTCCGACCGTCTTCGAGCTGTTTGCCAGCGAA 42745106 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || |||||||| | || | ||| |||||||| ||||| |||||| Sbjct 42745105 AATGAGACGCTGCTGGTCGGGTGGGATCCCTTCCTTGTCTTGGATCTTGGCCTTGACGTT 42745046 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || | || || |||| |||||||| || || || || || ||||| Sbjct 42745045 GTCGATGGTGTCGGAGCTTTCGACCTCGAGTGTTATGGTCTTGCCGGTAAGGGTTTTCAC 42744986 Query 34970 AAAGATCTGCATATTC 34985 |||||||||||| ||| Sbjct 42744985 AAAGATCTGCATCTTC 42744970 >seq10 Length=62175169 Score = 89.7 bits (98), Expect = 3e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || || | | | | || |||| || |||||||||||||| || Sbjct 51860867 TCCTTCTGGATGTTGTAATCGGCCAAGGTCCGGCCATCTTCGAGCTGTTTTCCGGCGAAG 51860808 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||| |||||| | || | ||| |||||||| || ||| || ||| Sbjct 51860807 ATGAGACGTTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGGATTTTCGCCTTAACGTTG 51860748 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || ||| || |||| ||| ||||| || || || || ||||| || Sbjct 51860747 TCGATCGTGTCGGAACTCTCGACTTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTAACG 51860688 Query 34971 AAGATCTGCATATT 34984 ||||||||||| || Sbjct 51860687 AAGATCTGCATCTT 51860674 >seq1 Length=55868233 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| | | | | || | || || ||||| || ||||| || Sbjct 19916794 TTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGGCCGTCTTCGAGCTGCTTCCCGGCGAA 19916853 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || || ||||| | || | ||||||||||| ||||| |||||| Sbjct 19916854 GATAAGGCGCTGTTGGTCGGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTT 19916913 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || || |||||| || | ||||||||| || ||||| || || || || Sbjct 19916914 GTCGATTGTATCGGAGGACTCAACCTCTAAGGTTATGGTCTTCCCCGTCAGGGTTTTGAC 19916973 Query 34970 AAAGATCTGCATATT 34984 ||||||||||| || Sbjct 19916974 GAAGATCTGCATCTT 19916988 >seq8 Length=57128820 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| | | | | || | || || ||||| || |||||||| Sbjct 38526337 TTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 38526278 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || || ||||| | || | ||||||||||| ||||| |||||| | Sbjct 38526277 GATGAGGCGCTGTTGGTCGGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCTTTGAC--A 38526220 Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | | ||||| || | |||||| || | ||||||||| || ||||| || || | Sbjct 38526219 T--TGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTT 38526162 Query 34966 TCACAAAGATCTGCATATT 34984 | || ||||| ||||| || Sbjct 38526161 TGACGAAGATTTGCATCTT 38526143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324629509007952