Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2 118 1e-21 seq3 93.3 5e-14 seq5 86.0 7e-12 >seq2 Length=62769430 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||||| ||||||| || | || | | |||||||||||| ||| Sbjct 29135070 CCTCCTTGATCAACATATCGAGCAGTATCATTGAACACCCGCAGCATTGGGACAATTCCA 29135011 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| ||||||| ||||| ||||||||| || | |||| ||||| || ||| Sbjct 29135010 TTAGATGTACCATTTGTTCCACGAATATAACTACCTGTGGCTCGAATATTGTGAACAGAA 29134951 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| || | ||||||| || | || ||||| ||| Sbjct 29134950 ACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATATATT 29134891 Query 48540 CCTTCTATACTATCATCTATCAT 48562 ||||| |||||||||||| |||| Sbjct 29134890 CCTTCAATACTATCATCTTTCAT 29134868 >seq3 Length=45765648 Score = 93.3 bits (102), Expect = 5e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | ||||| | || | || | | |||||||||||| ||| Sbjct 6819936 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACCCGCAGCATTGGGACAATGCCA 6819995 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| ||||||| ||||| ||| ||||| | |||| | ||||| || ||| Sbjct 6819996 TTAGATGTACCATTTGTTCCACGAATGTAACTACTTGTAGCCCGAATATTGTGAACTGAG 6820055 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| || | ||||||| || | || ||||| ||| Sbjct 6820056 ACACCAATTCCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTGTCATATATT 6820115 Query 48540 CCTTCTATACTATCATCTATCATA 48563 || || ||||| |||||| ||||| Sbjct 6820116 CCCTCAATACTGTCATCTTTCATA 6820139 >seq5 Length=64140413 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||| ||||| || || ||||| |||||| ||| | ||||| || ||||| ||| Sbjct 3843901 CAAGCAAAGTCACAGTGAAGCCCCTCATCTCTAGATATAAGCTCATTTGAGAATGTCAAA 3843842 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATAT 19055 |||||||||||||| || ||||| | |||||| || Sbjct 3843841 CCAGGCATCAGTCCCCTCTTTTTAAGCCAGAAAAT 3843807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562101534743760