Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq6 86.0 1e-11 seq12 84.2 5e-11 >seq6 Length=51074515 Score = 86.0 bits (94), Expect = 1e-11 Identities = 114/153 (75%), Gaps = 4/153 (3%) Strand=Plus/Plus Query 150675 GCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCG-TGTCATCGGTGCAACAAC- 150732 ||||| |||| || ||| || ||| || ||| | || ||| || || ||||| || Sbjct 2560307 GCAATCTGTTGAAGCCTATGCTTGGTCGGGGAGAACTGCGATGT-ATTGGGGCAACGACT 2560365 Query 150733 CTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCACTACAGCGTCGTTTCATGAA 150792 ||| ||||||||||||||| ||||||| |||||| | || || | ||||||||| | | Sbjct 2560366 CTA-GATGAATATCGTAAATACATTGAGAAAGATCCTGCCCTGGAACGTCGTTTCCAGCA 2560424 Query 150793 GGTTGATATTGTTGAACCGACACTTGAAGAAAC 150825 |||| || ||| | |||| ||| | ||||| || Sbjct 2560425 GGTTTATGTTGATCAACCAACAGTAGAAGATAC 2560457 >seq12 Length=35429946 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 150700 TCGCGGTGAAATTCGTGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGA 150759 ||| || ||| | || |||||| |||||||| ||||||||||||||| ||||||| Sbjct 6521899 TCGGGGAGAACTGCGATGCATCGGGGCAACAACACTGGATGAATATCGTAAATACATTGA 6521958 Query 150760 AAAAGATGCAGCACTACAGCGTCGTTTCATGAAGGTTGATATTGTTGAACCGACACTTGA 150819 ||||||| | || || |||||||||| | ||||| || ||| | | || || | || Sbjct 6521959 AAAAGATCCTGCTCTGGAGCGTCGTTTTCAGCAGGTTTATGTTGGTCAGCCATCAGTAGA 6522018 Query 150820 AGAAAC 150825 ||| || Sbjct 6522019 AGATAC 6522024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147575196578932