Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_019767.1 Length=40155 Score E Sequences producing significant alignments: (Bits) Value seq2 450 4e-122 >seq2 Length=62769430 Score = 450 bits (498), Expect = 4e-122 Identities = 263/272 (97%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 28652 TTACCAGCTATGCGCCGACCAGAACACCTTGCCGATCAGCCAAACGTCTCTTCTGGCCAC 28711 ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 60927424 TTATCAGCTATGCGCCGACCAGAACACCTTGCCGATCAGCCAAACGTCTCTTCAGGCCAC 60927483 Query 28712 TGGCTGGCGATAACTTTCCCCACAACGGAACAACTCTCATTGCATGGGATCATTGGATAT 28771 || || |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 60927484 TGACTAGCGATAACTTTCCCCACAACGGAACAACTCTCATTGCATGGGATCATTGGGTAC 60927543 Query 28772 TGCGGGTTTAGTGGTTGTAAAAACACCTGACCGCTATCCCTGATCAGTTTCTTGAAGGTA 28831 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60927544 TGTGGGTTTAGTGGTTGTAAAAACACCTGACCGCTATCCCTGATCAGTTTCTTGAAGGTA 60927603 Query 28832 AACTCATCACCTCCAAGTCTGGCTATGCAAAAATCACCTGGCTCAACAGCCTGCTCAGGG 28891 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 60927604 AACTCATCACCCCCAAGTCTGGCTATGCAGAAATCACCTGGCTCAACAGCCTGCTCAGGG 60927663 Query 28892 TCAACGAGAATTAACATTCCGTCAGGAAAGCT 28923 |||||||||||||||||||||||||||||||| Sbjct 60927664 TCAACGAGAATTAACATTCCGTCAGGAAAGCT 60927695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128372823722836